Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_H01
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 30 2.0
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 29 2.7
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 29 2.7
Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical pr... 29 4.7
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 4.7
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 29 4.7
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 29 4.7
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 29 4.7
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 4.7
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 28 8.2
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 724 RQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGDGVG*ACTTSGEGA 581
RQ+ G+ A+G + GSG +C G+ + P G +GA
Sbjct: 98 RQSYGDSGASGGFSSGGSGGGSCCSCGVGSAGPAGSPGQDGAPGNDGA 145
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 712 GNGKANGNQTGPGSGRSACACAGI-RNTAPGDGVG*ACTTSGEGA 581
G+G+++G +G GSG S+ +G A G+G G A SGEG+
Sbjct: 78 GSGESSGETSGEGSGESSGEASGEGSGEASGEGSGEA---SGEGS 119
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 712 GNGKANGNQTGPGSGRSACACAGI-RNTAPGDGVG*ACTTSGEGA 581
G+G+++G +G GSG S+ +G A G+G G A SGEG+
Sbjct: 78 GSGESSGETSGEGSGESSGEASGEGSGEASGEGSGEA---SGEGS 119
>Z83222-1|CAB05712.1| 410|Caenorhabditis elegans Hypothetical
protein E01B7.1 protein.
Length = 410
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 627 PGMELDRPVPPVVKAPRSPMIPPSAPRS 544
P + +PPV R PMIPPS P S
Sbjct: 348 PALNRQSTIPPVAMTQR-PMIPPSLPSS 374
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 405 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIYEGKMIV 268
+ N H L Y W + PLV V+ +A R +++A++ + +V
Sbjct: 677 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLV 723
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 405 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIYEGKMIV 268
+ N H L Y W + PLV V+ +A R +++A++ + +V
Sbjct: 435 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLV 481
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 405 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIYEGKMIV 268
+ N H L Y W + PLV V+ +A R +++A++ + +V
Sbjct: 371 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLV 417
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 405 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIYEGKMIV 268
+ N H L Y W + PLV V+ +A R +++A++ + +V
Sbjct: 600 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLV 646
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 405 VENCHRLLEKFHYSWEMMPLVLVIMNYA-RSDLDEASRKIYEGKMIV 268
+ N H L Y W + PLV V+ +A R +++A++ + +V
Sbjct: 677 IRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLV 723
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 633 QPPGMELDRPVPPVVKAPRSPMIPPSAP 550
QPP + PVP + P P +PP +P
Sbjct: 152 QPPPTPIPTPVPILEPPPPPPPVPPLSP 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,329,272
Number of Sequences: 27780
Number of extensions: 303120
Number of successful extensions: 1366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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