Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G19
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   125   8e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   121   1e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    30   0.42 
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   5.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   9.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  125 bits (301), Expect = 8e-30
 Identities = 65/115 (56%), Positives = 77/115 (66%)
 Frame = -2

Query: 714 FAXHTRXYAYCGTFHXQVLLLTRSKLHSREPRLLIVLDPAQDHQPITEASYVNIPVIALC 535
           FA HT   A  G F         ++ + REPRL++V DP  D Q I EAS+VNIPVIALC
Sbjct: 92  FAAHTGATAIAGRFTPGNFTNYITRTY-REPRLIVVTDPRADAQAIKEASFVNIPVIALC 150

Query: 534 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
           +TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 151 DTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  121 bits (292), Expect = 1e-28
 Identities = 64/115 (55%), Positives = 76/115 (66%)
 Frame = -2

Query: 714 FAXHTRXYAYCGTFHXQVLLLTRSKLHSREPRLLIVLDPAQDHQPITEASYVNIPVIALC 535
           FA HT   A  G F         ++ + REPRL+IV DP  D Q I EAS+VNIPVIALC
Sbjct: 93  FAAHTGATAIAGRFTPGNFTNYITRTY-REPRLIIVTDPRADAQAIKEASFVNIPVIALC 151

Query: 534 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
           +TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 152 DTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYF 206



 Score = 30.7 bits (66), Expect = 0.24
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 763 VXVXSXRPFGQRAVXKXCRAHPVXRLLRDVSXPGAFTNQIQAAF 632
           V V S RP+G RAV K   AH     +     PG FTN I   +
Sbjct: 77  VCVISSRPYGHRAVLKFA-AHTGATAIAGRFTPGNFTNYITRTY 119


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 624 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 445
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 444 AR 439
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = -2

Query: 687 YCGTFHXQVLLLTRSKLHSREPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPL 517
           + G  +  VL    ++  + +P + ++     D   +   T A    +  + LC+ +S  
Sbjct: 35  HLGHLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK- 93

Query: 516 RFVDIAIPCNTKSSHSI 466
           RF D+A+  NTK +H I
Sbjct: 94  RFADLAVAANTKFTHFI 110


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 352 LQGSRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 495
           L G+R  +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 689 PIAGRFTXRCFY*PDPSCIPVNLVS*LYWTLHKTINP 579
           PI  R   +C++   P C+     + + W L K  NP
Sbjct: 379 PILARLNQKCYFMSIPCCVHDLTGAKISWALPKPRNP 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,087
Number of Sequences: 5004
Number of extensions: 55720
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)