Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G19
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   122   4e-28
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   122   4e-28
01_06_0867 - 32586254-32586574,32586756-32587172                       29   4.1  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   5.4  
06_03_0543 + 21967787-21970261                                         29   5.4  
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038     29   5.4  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  122 bits (293), Expect = 4e-28
 Identities = 58/115 (50%), Positives = 75/115 (65%)
 Frame = -2

Query: 714 FAXHTRXYAYCGTFHXQVLLLTRSKLHSREPRLLIVLDPAQDHQPITEASYVNIPVIALC 535
           FA +T  +A  G  H       + +    EPRLLI+ DP  DHQPI E++  NIP IA C
Sbjct: 94  FAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152

Query: 534 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
           +TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 153 DTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207



 Score = 36.3 bits (80), Expect = 0.027
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 763 VXVXSXRPFGQRAVXKXCRAHPVXRLLRDVSXPGAFTNQIQAAF 632
           + V S RP+GQRAV K  + +     +     PG FTNQ+Q +F
Sbjct: 78  IIVQSARPYGQRAVLKFAQ-YTGAHAIAGRHTPGTFTNQLQTSF 120


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  122 bits (293), Expect = 4e-28
 Identities = 58/115 (50%), Positives = 76/115 (66%)
 Frame = -2

Query: 714 FAXHTRXYAYCGTFHXQVLLLTRSKLHSREPRLLIVLDPAQDHQPITEASYVNIPVIALC 535
           FA +T  +A  G  H       + +    EPRLLI+ DP  DHQPI E++  NIP IA C
Sbjct: 94  FAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152

Query: 534 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
           +TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 153 DTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207



 Score = 36.3 bits (80), Expect = 0.027
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 763 VXVXSXRPFGQRAVXKXCRAHPVXRLLRDVSXPGAFTNQIQAAF 632
           + V S RP+GQRAV K  + +     +     PG FTNQ+Q +F
Sbjct: 78  IIVQSARPYGQRAVLKFAQ-YTGAHAIAGRHTPGTFTNQLQTSF 120


>01_06_0867 - 32586254-32586574,32586756-32587172
          Length = 245

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 337 HPFHFLQG--SRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNV 507
           H    LQG  S  E Q+ +   AL +    T PQHF   QP H   + + ++ V +D   
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197

Query: 508 H 510
           H
Sbjct: 198 H 198


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 208 TRCGSCFWSTPCSRRMVCPGTR*VEHN 128
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 462 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 373
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
          Length = 650

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 322 LGLVVHPFHFLQGSRXEEQINHNIPALVTGKHT 420
           LGLVV  F+ L G R    +NH   +L+T K++
Sbjct: 311 LGLVVIVFYSLHGRRRISSMNHTDGSLITFKYS 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,618,429
Number of Sequences: 37544
Number of extensions: 394674
Number of successful extensions: 1013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)