Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G18
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   7.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   8.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 706 PXPPPXXPPPXXPPPXXXP 762
           P PPP   PP  PPP   P
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 715 PPXXPPPXXPPPXXXP 762
           PP  PPP  PPP   P
Sbjct: 5   PPGNPPPPPPPPGFEP 20



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 712 PPPXXPPPXXPPPXXXP 762
           PPP  PPP   PP   P
Sbjct: 9   PPPPPPPPGFEPPSQPP 25


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
 Frame = +1

Query: 658 PXXPXXXXPXXXXXXXPXPPP----XXPPPXXPPP 750
           P  P    P       P PPP      PPP  PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
 Frame = +1

Query: 658  PXXPXXXXPXXXXXXXPXPPP--XXPPPXXPPPXXXP 762
            P  P    P       P PPP    PPP  PP    P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 7.3
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 657 APXPXXXXXXAXXXXXPXPPXXXPPPXXPPP 749
           +P P      A       P    PPP  PPP
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196



 Score = 20.6 bits (41), Expect(2) = 7.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 726 PPPXXPPPS 752
           PPP  PPP+
Sbjct: 190 PPPPPPPPA 198


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 322 LRSLISNLSNTCDLTPLPEWSCEQSAW 242
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,713
Number of Sequences: 5004
Number of extensions: 14124
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)