Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G17
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +2

Query: 692  SPPPQXPXAXXPXXQXXLPPKTHXXXXTPPXXPSRXSXXPXXXPPP 829
            +PP +   A  P      PP        PP  P   +  P   PPP
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +3

Query: 669  KPXXPXSXLPPPXDPXPXXRXXXGXSPRKPTXXXPPPP 782
            KP      +PPP +  P  +   G  P  P    PP P
Sbjct: 1183 KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/91 (23%), Positives = 24/91 (26%), Gaps = 1/91 (1%)
 Frame = +3

Query: 573  PXXPGPXXXPXXKQXXPXRXLXXXPVGXLLXEKPXXPXSXLPPPXDPXPXX-RXXXGXSP 749
            P  P P   P   +          P G     KP      +P P    P   +   G  P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190

Query: 750  RKPTXXXPPPPXXXXXXXXXPSXXRPPPXXT 842
              P    PP P         P     PP  T
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 692 SPPPQXPXAXXPXXQXXLPPKTHXXXXTPPXXPSRXSXXPXXXPPPP 832
           S  P  P +  P  Q   P K+     + P  PS     P   PPPP
Sbjct: 162 SKAPPIPSSLPPPAQPAAPVKS---PPSAPSLPSAVPPMPPKVPPPP 205



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/45 (26%), Positives = 14/45 (31%)
 Frame = +2

Query: 698 PPQXPXAXXPXXQXXLPPKTHXXXXTPPXXPSRXSXXPXXXPPPP 832
           PP  P    P  +   P         PP  P+     P   PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
 Frame = +2

Query: 692 SPPPQXPXAXXPXXQXX---LPPKTHXXXXTPPXXPSRXSXXPXXXPPPP 832
           SPPP  P    P        +PP        PP  P          PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,201
Number of Sequences: 5004
Number of extensions: 16153
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)