Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G16
         (981 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0506 - 18188785-18190599                                         31   1.9  
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909...    28   9.9  

>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -2

Query: 803 EGXRGGGXVXGXX--EVGGTXXXGXEEXRGXXRXGGXXXVXGNWG 675
           +G RGGG   G    +VGG    G     G    GG     GNWG
Sbjct: 289 KGGRGGGAAGGPGGAQVGGNYGGGRGGGGGGPGGGGGGGGGGNWG 333


>02_05_1258 +
           35290183-35290198,35290292-35290599,35290844-35290939,
           35291067-35291144,35291224-35291400,35292738-35292806,
           35292917-35293093
          Length = 306

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = -1

Query: 879 RGXRXRXXXKXXXXGRXXGRGXXXGGRXAXGXXSXGXGXSXGHXXXRGXGXXRLXEGRRX 700
           RG R     +    GR  GRG   GGR   G    G     G    RG G   +  G + 
Sbjct: 11  RGGRGDGGGRSGGGGRGFGRGGDSGGRGGRG--RGGGRTPRGRGGGRGGGRGGMKGGSKV 68

Query: 699 V 697
           V
Sbjct: 69  V 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,056
Number of Sequences: 37544
Number of extensions: 181856
Number of successful extensions: 737
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)