Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G11
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   5.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.6  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 44  LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR 199
           ++L   +  +   S    +E   ST+YS P    E  PD   + + V+ KN+
Sbjct: 230 IALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNK 281


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +2

Query: 29  SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HR 208
           S  +  S   SQH   L    P  E+KS  D S PR +    P   S+ + +K+K R  +
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRK----PSFFSK-SNLKRKYRYLK 187

Query: 209 SPRSKWASTSRLAF*MRNATSK 274
           +P   W     L F  +N   K
Sbjct: 188 NP-DAWNLPPSLQFIPKNLNRK 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,577
Number of Sequences: 5004
Number of extensions: 65241
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)