Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G10
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    97   4e-21
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    97   4e-21
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    28   1.4  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    28   1.9  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.3  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   4.4  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.4  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 50/104 (48%), Positives = 65/104 (62%)
 Frame = -3

Query: 725 KXNGPREHLXETYPCRFLCLPXDEMIDCIGVTQGQRIXKVSLLVGTQRSYPRKTHQGS*E 546
           K    REH  +T   +      +EMID IGVT+G+     +   GT+R  PRKTH+G  +
Sbjct: 191 KVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRK 248

Query: 545 SSCIGAWHPSRVSFTVARAGQRGYHHRTEMNKKIYRIGPRNPQK 414
            +CIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 249 VACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -2

Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 111 D 109
           D
Sbjct: 386 D 386



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -1

Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
           NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 50/104 (48%), Positives = 65/104 (62%)
 Frame = -3

Query: 725 KXNGPREHLXETYPCRFLCLPXDEMIDCIGVTQGQRIXKVSLLVGTQRSYPRKTHQGS*E 546
           K    REH  +T   +      +EMID IGVT+G+     +   GT+R  PRKTH+G  +
Sbjct: 191 KVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRK 248

Query: 545 SSCIGAWHPSRVSFTVARAGQRGYHHRTEMNKKIYRIGPRNPQK 414
            +CIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 249 VACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -2

Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 111 D 109
           D
Sbjct: 386 D 386



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -1

Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
           NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 522 MPSSNAGTFLRPLVCLTGVASLCA 593
           MPSS AG  + P V  T V SLC+
Sbjct: 324 MPSSEAGVRIFPYVISTSVGSLCS 347


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 633 HPRAKDTKGVTSRWHTKKLPP*DTPRVLGKFLHW 532
           H  + DT  +    HT KLPP  +  V  +FL W
Sbjct: 296 HLHSLDTHSLDISTHTFKLPPLMSKEVFQQFLQW 329


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 495 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 349
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 579 ASLCANEK*HLXYPLPLGDTN-AVNHFI 659
           A+ C N   HL    P  DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 130 HGYTQEGSYSRRSCGYHNPS 71
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 471 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 331
           SP+    + L+Y   E  +   K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 378 SVDALFLITLPSFLWIPW 431
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,838
Number of Sequences: 5004
Number of extensions: 67572
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)