Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_G08
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       29   3.6  
01_06_0581 - 30386018-30386440                                         29   4.7  
05_07_0021 - 27100249-27101838,27102434-27102547                       29   6.3  
06_03_1146 - 28004896-28005554,28005664-28005844                       28   8.3  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +1

Query: 559 P*SAPPXXXXAPXPQTTXSPXPRYPXPNLLXXIXXXVPXPXSXP 690
           P S PP     P P    +P P +P P+L        P P   P
Sbjct: 252 PPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPP 295


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 280 SGVRSQVLERLEMRLRSGGGGARRQ 354
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>05_07_0021 - 27100249-27101838,27102434-27102547
          Length = 567

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 268 DHSGSGVRSQVLERLEMRLRSGGGGARRQRCTRXTSAXXAQHADAHXXXG 417
           + + +  RS+  E    R R+ GGG+RR +  R  +A  A  A AH   G
Sbjct: 89  EQTNAKARSRRSELQRQRTRASGGGSRR-KTARGLAAEAAGGAPAHRQEG 137


>06_03_1146 - 28004896-28005554,28005664-28005844
          Length = 279

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
 Frame = +1

Query: 532 GGRPGXXXXP*SAPPXXXXAPXP---QTTXSPXPRYPXPNLLXXIXXXVPXP-XSXPXXX 699
           GGR      P + PP     P P    +  SP P    P+L        P P  S     
Sbjct: 136 GGRHAPPPSPPAVPPPVAPVPMPSPASSPPSPAPAAATPSLAPSPVATTPSPSPSVSPMA 195

Query: 700 XAXXPXTXTP 729
            A  P T TP
Sbjct: 196 PAPAPTTSTP 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,642
Number of Sequences: 37544
Number of extensions: 240232
Number of successful extensions: 1012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)