Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_G02
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.25
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.25
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 3.0
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.0
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.0
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.0
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 5.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 5.3
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 9.2
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 819 GGXDXXGGGXEGXFGXXRKXXXGXFGFVXGGGLXXEXGAIXXXGXGEXXXGG 664
GG + GGG G G ++ G +G GGG G G G+ GG
Sbjct: 179 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGG 230
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 819 GGXDXXGGGXEGXFGXXRKXXXGXFGFVXGGGLXXEXGAIXXXGXGEXXXGG 664
GG + GGG G G ++ G +G GGG G G G+ GG
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGG 268
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = -1
Query: 819 GGXDXXGGGXEGXFGXXRKXXXGXFGFVXGGGLXXEXGAIXXXGXGEXXXGGXXXG 652
GG GGG G FG G G GGG G++ G GG G
Sbjct: 53 GGGGGGGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGG 108
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 819 GGXDXXGGGXEGXFGXXRKXXXGXFGFVXGGGLXXEXGAIXXXGXGEXXXGG 664
GG + GGG G G ++ G +G GGG G G G+ GG
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGG-QGGYGGDYGGGWGQQGGGG 267
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 819 GGXDXXGGGXEGXFGXXRKXXXGXFGFVXGGGLXXEXGAIXXXGXGEXXXGG 664
GG + GGG G G ++ G +G GGG G G G+ GG
Sbjct: 179 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGG-QGGYGGDYGGGWGQQGGGG 229
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 819 GGXDXXGGGXEGXFGXXRKXXXGXFGFVXGGGLXXEXGAIXXXGXGEXXXGG 664
GG + GGG G G ++ G +G GGG G G G+ GG
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGG-QGGYGGDYGGGWGQQGGGG 267
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +2
Query: 536 PPPXXQXTPDXPXQXRPPPXXXXVXXPXCPXQRSXNLXXPXXXPPXXXS-PHPLXKXAP 709
PPP Q P Q +PP V P Q++ P PP + P P + AP
Sbjct: 262 PPPKQQQAQAQPVQ-QPPNPAPVVQQASAPVQQAPPKPVPQQTPPVQQAPPKPAVQQAP 319
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +1
Query: 526 PXXPASRRTAXPXQXXPXTPPAPXXXCXRXPLSXTEIXQPXXPXXXTPXXXLPXPXP 696
P P RT P P PP R P +P P TP +P P P
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP-PRTPPSPIPPPPP 196
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -1
Query: 816 GXDXXGGGXEGXFGXXRKXXXGXFGFVXGGGLXXEXGAIXXXGXGEXXXGGXXXG 652
G + GGG G G R G G GGG + G G G GG G
Sbjct: 69 GGNNGGGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDG 123
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/59 (25%), Positives = 19/59 (32%)
Frame = +2
Query: 494 PXTXTHWXSTAPAXPPPXXQXTPDXPXQXRPPPXXXXVXXPXCPXQRSXNLXXPXXXPP 670
P T T A PPP + P + PPP P + + P PP
Sbjct: 178 PTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPP 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,554,891
Number of Sequences: 27780
Number of extensions: 105255
Number of successful extensions: 517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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