Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_F24
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.9
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 27 4.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.7
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 5.7
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 7.5
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 10.0
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 10.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 10.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 10.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 10.0
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.9
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = +3
Query: 171 ASDLRPG-SKPGQS--RGVPAVNTTTRHAAPPRGRPTDGSSRR*STTNDVSLRGTAALPG 341
AS LR G S G + PAV ++ P +P+ + + RGT +LP
Sbjct: 66 ASQLRAGGSSTGSTPRTASPAVGNQD-YSKPSYSQPSYSQPSQPPKEPALPSRGTPSLPS 124
Query: 342 RPGDAAGVPGYPAGPEPACR 401
RPG V P P R
Sbjct: 125 RPGSRPSVLNQEQVPPPPVR 144
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 265 RPRGGAACLVVVLTAGTPLL*PGFDPGRR 179
RP GGA C+ +++ P++ F+PG R
Sbjct: 158 RPTGGAGCVALLVGPNAPIV---FEPGLR 183
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 650 PPPSXRGXXXGRLPAPAPMRRQSPP 576
PPP R G +P P P R +PP
Sbjct: 339 PPPPPRSNAAGSIPLP-PQGRSAPP 362
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 195 KPGQSRGVPAVNTTTRHAAPP--RGRPTDGSSRR*STTND 308
KP S+ A NTT+R PP R R G++ TT+D
Sbjct: 445 KPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSD 484
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 129 RAHPLNDSPALLHPASDLRPGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR 290
R PLN SP+ L P S+ + G+ + T PP R T G + R
Sbjct: 337 RRSPLN-SPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPPSRRKTGGLNTR 389
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 138 PLNDSPALLHPASDLRPGSKPGQSRGVPA 224
P N++PA ++ RP S P S VPA
Sbjct: 258 PANETPASSSSSAKARPVSVPDMSSPVPA 286
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 358 LVFRDTPLGQNQPAGSERDTPPTELLF 438
LV+ + +G++QPA +D PP ELLF
Sbjct: 351 LVWDLSRIGEDQPAEEAQDGPP-ELLF 376
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 186 PGSKPGQSRGVPAVNTTTRHAAP 254
P +PG S G+ A+NT T P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 186 PGSKPGQSRGVPAVNTTTRHAAP 254
P +PG S G+ A+NT T P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 189 GSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTN 305
GSK Q+ P ++ + APP+ +P S +TT+
Sbjct: 741 GSKKKQTEIPPVSSSPPHNDAPPKAKPISAPSELPNTTS 779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,684
Number of Sequences: 5004
Number of extensions: 50196
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -