Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_F24
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 35 0.091
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 33 0.28
03_05_0065 + 20450814-20452748 33 0.37
01_04_0109 + 16112581-16112934 32 0.49
05_07_0359 - 29539294-29540832,29542366-29542518 31 1.5
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 30 2.0
04_04_1330 - 32700333-32700770 30 2.0
04_04_1421 - 33449539-33449994 29 3.4
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 29 4.5
01_06_1076 + 34359922-34360452 29 4.5
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 29 6.0
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 29 6.0
05_01_0570 + 5061600-5062142,5062790-5062972 29 6.0
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 29 6.0
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551... 28 7.9
03_03_0023 + 13839421-13840326 28 7.9
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 28 7.9
02_05_0781 + 31715100-31715672 28 7.9
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 34.7 bits (76), Expect = 0.091
Identities = 27/81 (33%), Positives = 38/81 (46%)
Frame = +3
Query: 36 SYEVPAPRGRAGYVRLNDLQVLRADRGPKEFRAHPLNDSPALLHPASDLRPGSKPGQSRG 215
S + P PRGR G VR + L +R D G +E + A +H + R G+ ++R
Sbjct: 105 SKDAPLPRGRRGTVRSSKL--IRPDDGEEEGKEDENRGENAPVH--GEGRRGAS-RRARA 159
Query: 216 VPAVNTTTRHAAPPRGRPTDG 278
P V TTR A P + G
Sbjct: 160 EPVVAPTTRRRAAPTSKIETG 180
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 33.1 bits (72), Expect = 0.28
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Frame = +2
Query: 17 SGRGPNLLR-GPRA*GARGVCETQRSAGVESR--PRAQGI*GPPTKRLPC-----TLTPG 172
S PN L PR+ + RS SR P P++R P TLTP
Sbjct: 96 SSASPNRLSLSPRSSSSNTALTRTRSTNSSSRCSPPLSLQSSTPSRRSPTPPGNKTLTPP 155
Query: 173 VRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRR 277
RSPS R S G N TRGA+P +RR
Sbjct: 156 RRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>03_05_0065 + 20450814-20452748
Length = 644
Score = 32.7 bits (71), Expect = 0.37
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Frame = +3
Query: 186 PGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSS----RR*STTNDVSLRGTAALPGRP-- 347
PGSKP + T AA GR GS R + + G A R
Sbjct: 12 PGSKPRPAAATSVSTAATADAAVAGGRSGSGSGSGIGRLSALIRSLCSAGRTAEAARALA 71
Query: 348 --GDAAGVPGYPAGPEPACRVGTRYTADRVA 434
GDAAGV Y A CR G A R+A
Sbjct: 72 DAGDAAGVVAYNAMVAGYCRAGQLAAARRLA 102
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.49
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +3
Query: 159 LLHPASDLRPGSKPGQSRGVPAVN--TTTRHAAPPRGRPTDGSSRR*STTNDVSLRGTAA 332
+L P + L P + R A + T H + R +PT SRR + R AA
Sbjct: 5 VLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGRGSSAARKAAA 64
Query: 333 LPGRPGDAAGVPGYPAGPEPA 395
P AG P + PEP+
Sbjct: 65 RPVAVEVYAG-PAFSVSPEPS 84
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/75 (33%), Positives = 29/75 (38%)
Frame = +3
Query: 171 ASDLRPGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTNDVSLRGTAALPGRPG 350
A+ LR G K G R T RG G R+ +T +SL G PGRP
Sbjct: 204 ATPLRLGVKRGPGRPRKNAAATPLRLGAKRG---PGRPRKNATATPLSL-GVKRGPGRPR 259
Query: 351 DAAGVPGYPAGPEPA 395
A P P PA
Sbjct: 260 KNAAAAASPVAPPPA 274
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 168 PASDLRPGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGS 281
PAS + G+K G G PA T+ A + +P +GS
Sbjct: 251 PASAAKDGAKDGAKDGTPAPANGTKKPAESKEKPANGS 288
>04_04_1330 - 32700333-32700770
Length = 145
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 170 GVRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRRVVEAIVDDQR 307
G R G E GG R +H + A+P P+R VV + + +R
Sbjct: 20 GSRRRGGGSDGEELGGGRDEHEGERERASPVEPEREVVGVVGERER 65
>04_04_1421 - 33449539-33449994
Length = 151
Score = 29.5 bits (63), Expect = 3.4
Identities = 28/74 (37%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +3
Query: 222 AVNTTTRHAAPPRGRPTDGSSR-R*STTNDVSLRGTAALPGRPGDAAGVPGYPAGPEPAC 398
AV T AA DG+ R R NDV G P P AG GYPA P PA
Sbjct: 32 AVAATVAVAAVAAFGCADGAKRQRRKNRNDVYYYGQGYPPPPP---AGAYGYPAQPPPA- 87
Query: 399 RVGTRYTADRVALP 440
G Y A P
Sbjct: 88 --GYAYPAANAGRP 99
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.1 bits (62), Expect = 4.5
Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Frame = +1
Query: 109 TAGP-RNLGPTH*TTPLHSYTRRPISVRGQNPVRVGGFPRSTLQPDTRRHPEDARPTGRR 285
TA P R PT P R + GQ PV G RS+ P R E P R
Sbjct: 73 TATPKRTRTPTSTCAPPPPPHARHAPMTGQTPV-AGS--RSSRPPRGRGQMEVDSPQPSR 129
Query: 286 GDSRRPTTSVSAVRRPYQAARAMPLVFRDTPLGQNQPAGSERDTPP 423
PT R P AAR M F+++P+ P ++ P
Sbjct: 130 ALHTPPTGQRQVTRHPPPAARTM---FQESPVASVSPPQQQQVAVP 172
>01_06_1076 + 34359922-34360452
Length = 176
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = +3
Query: 246 AAPPRGRPTDGSSRR*STTNDVSLRGTAALPGRPGDAAGVPGYPAGPEPAC 398
+A PR RP G SRR S+ R A P RPG G P AC
Sbjct: 68 SAQPRRRPR-GGSRRWSSRGRQPGRQQKAAPRRPGRRLKAEGVRCRPMVAC 117
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -3
Query: 386 WPSGVSRNTSGIARAAW*GRRTAETDVVGRRLSPRRPVGRASSGWRRVSG 237
W ++ +SG R +W G R +D + G +G RRV G
Sbjct: 48 WKVHTTKRSSGTRRISWVGERRQRSDEARPERRRQEGAGGRGAGVRRVEG 97
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 164 TPGVRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRRVVE 286
+P +RSPSG+K + + G N+ R T R PD ++++
Sbjct: 497 SPMLRSPSGLKNFNAELKAAGYDLNRWRETTRRRPDLQILD 537
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTS 312
VGG ++ RR P TG G +RRPT++
Sbjct: 159 VGGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 183 RPGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSS 284
R G + G+ P+ TTRHA P R DG +
Sbjct: 583 RRGGRGGRRLPSPSTRPTTRHALPGEDRSHDGGA 616
>06_01_0741 -
5510159-5510581,5510862-5511124,5511223-5511400,
5511411-5511698,5511801-5511899,5511973-5512440,
5512559-5512744,5512887-5513004,5513035-5513228
Length = 738
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 321 GTAALP-GRPGDAAGVPGYPAGPEPACRVG 407
G LP GRPG AAG AGP A R G
Sbjct: 650 GFTILPDGRPGSAAGASTSSAGPLAAARGG 679
>03_03_0023 + 13839421-13840326
Length = 301
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +3
Query: 240 RHAAPPRGRPTDGSSRR*STTNDVSLRGTAALPGRPGDAAGVPGYPAGPEPA 395
RHA PR PT ++RR V++ AL RP A VPG+P P PA
Sbjct: 7 RHARLPR--PTAPTARRSRRLRVVAV----ALRTRPTSLA-VPGFPPAPAPA 51
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 28.3 bits (60), Expect = 7.9
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +3
Query: 141 LNDSPALLHPASDLRP--GSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTNDVS 314
LN PA D+ P G+ P G+ VN+ + A + R SS+ TT VS
Sbjct: 75 LNYFPAGESGGGDVSPTIGAGPRGGTGMSVVNSRVKRALGLKARR---SSQ--PTTARVS 129
Query: 315 LRGTAALPGRPGDAAGVPGYPAGP 386
++ PG PG A P+ P
Sbjct: 130 SMNASSAPGSPGRAMWAMSQPSTP 153
>02_05_0781 + 31715100-31715672
Length = 190
Score = 28.3 bits (60), Expect = 7.9
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Frame = +3
Query: 240 RHAAPPRGRPTDGSSRR*STT---NDV-SLRG-TAALPGRPGDA------AGVPGYPAGP 386
RHAA P RP+ +SRR STT DV S R L G P A +P + P
Sbjct: 64 RHAAAPPPRPSASTSRRSSTTVVATDVSSFRSMVQELTGFPAAAIFRPLPRRIPVHAVNP 123
Query: 387 EPACR 401
PA R
Sbjct: 124 SPAVR 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,838,430
Number of Sequences: 37544
Number of extensions: 520042
Number of successful extensions: 2036
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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