Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F22
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    36   0.043
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    30   2.1  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        30   2.1  
AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical ...    30   2.1  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   4.9  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    24   6.2  
U67954-4|AAM54180.1|  345|Caenorhabditis elegans Wrapper/rega-1/...    28   6.5  
U55374-4|AAB36866.2|  589|Caenorhabditis elegans Immunoglobulin-...    28   6.5  
U55374-3|ABS19462.1|  591|Caenorhabditis elegans Immunoglobulin-...    28   6.5  
AF456364-1|AAL60235.1|  344|Caenorhabditis elegans immunoglobuli...    28   6.5  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    28   6.5  
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    28   8.6  
AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical...    28   8.6  
AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein phosp...    28   8.6  
AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase ...    28   8.6  

>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 456 PTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYR--SRRLQMCQFFFPTETC 629
           P+ ++CQ+  S+  T  TCIR    N+ ++      +  + R  S+ LQ+C     T TC
Sbjct: 90  PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQCLQICTTPSCTNTC 149

Query: 630 LLSCLLAC 653
             SC  AC
Sbjct: 150 SNSCSNAC 157


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 419 TSLTRRYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIAR 550
           TS  RR+SH  + NRE ++S     LH  +L PP   E R++ R
Sbjct: 334 TSRKRRHSHQPQGNREVVTSEESKKLH--SLKPPL-VEKRKMRR 374


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 384 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 545
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 384 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 545
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>AC006720-9|AAF60443.2|  480|Caenorhabditis elegans Hypothetical
           protein Y17G9B.1 protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 131 VLWQVQPETSTCVPELQCVTDKWFWLPLYVPFKV 30
           +LWQ+    +TC P LQ   ++W  L L + FK+
Sbjct: 421 ILWQL---ITTCKPRLQVDKERWIQLLLNIKFKI 451


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 381 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 554
           LP TT+ T+    P   + +   +KPT       T    T K       P T   P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 24.2 bits (50), Expect(2) = 6.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 459 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 554
           T   C    +T  T  TC+   NP T  S  T
Sbjct: 83  TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114



 Score = 22.6 bits (46), Expect(2) = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 309 SHVRLPVQTHKTFYHHANFLPQQILPATTQTTI 407
           S + + V   +TF      L QQ+L  TT+T++
Sbjct: 10  SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42


>U67954-4|AAM54180.1|  345|Caenorhabditis elegans
           Wrapper/rega-1/klingon homologprotein 1, isoform c
           protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 369 VRSLHGGKMSCESAQVAGRETSAVAAHPVRENRADRLDGXGGRPTGPP 226
           V+  H GK +C +  +AG + + +  H     + +R     GRP GPP
Sbjct: 177 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 219


>U55374-4|AAB36866.2|  589|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform a protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 RDLVVWRTRRPASXTVEAICP 273
           R +V WR R+P    V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313


>U55374-3|ABS19462.1|  591|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform b protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 RDLVVWRTRRPASXTVEAICP 273
           R +V WR R+P    V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313


>AF456364-1|AAL60235.1|  344|Caenorhabditis elegans immunoglobulin
           domain-containingprotein WRK-1C protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 369 VRSLHGGKMSCESAQVAGRETSAVAAHPVRENRADRLDGXGGRPTGPP 226
           V+  H GK +C +  +AG + + +  H     + +R     GRP GPP
Sbjct: 176 VKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQGER----EGRP-GPP 218


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 116 GPATAQCPTRRRTL-AQVQPERGAPISAVRAGG 211
           GP  A CP   RTL A   PE G   +A  AGG
Sbjct: 292 GPDAAYCPCPPRTLGAGAYPEGGDAAAAAPAGG 324


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +2

Query: 386 SHHANYNFTGSTSLTRR--YSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 559
           SH  ++   GS  LT+     H+EE +  H    H H  H + L       HR I +H R
Sbjct: 22  SHEHHHEGDGSEILTKVGWNDHSEELHDHH---EHDHDHHDEQLIRKNHTSHREI-QHSR 77

Query: 560 TGRLILQVTTTSD-VSIFLPHGNLLAFL 640
              L + V + S  V I L    LL F+
Sbjct: 78  LSTLKVWVFSLSAVVGISLAPCTLLFFI 105


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -1

Query: 372 AVRSLHGGKMSCESAQVAGRETSAVA-AHPVRENR--ADRLDGXGGRPTGPPNDEITPP 205
           AV    GG  +CE+  + G    A A  +P R  +  A  L G  G+P   P + ITPP
Sbjct: 90  AVHGGGGGGGNCEACCLPGPAGPAGAPGNPGRPGKPGAPGLPGNPGKPPVQPCEPITPP 148


>AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical
           protein Y41C4A.16 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = -1

Query: 354 GGKMSCESAQVAGRE-TSAVAAHPVRENR--ADRLDGXGGRPTGPPNDEIT-PPARTADI 187
           GG  SC    + G    S     P R  R  A  L G  GRP   P   IT PP R    
Sbjct: 101 GGGGSCSGCCLPGPAGPSGAPGKPGRPGRPGAGGLPGNPGRPPAQPCHPITPPPCRPCPQ 160

Query: 186 GAP 178
           G P
Sbjct: 161 GPP 163


>AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein
           phosphatase with EF-hands protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 335 SQDILPPCKLLTATNLTSHHANYNFTG--STSLTRRYSHTEEANREHLSSTHKHALHRKN 508
           S ++    +  T T  +S   NYN     ++S +     +  ++++H S   K +  +KN
Sbjct: 13  STELKKSTRATTTTTSSSQRNNYNDNNQNTSSSSGNKKESSSSSKQHSSKKSKKSNSKKN 72

Query: 509 LHPPAEPE 532
             P  +P+
Sbjct: 73  RSPSPQPQ 80


>AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase
           with ef hands protein1, isoform a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 335 SQDILPPCKLLTATNLTSHHANYNFTG--STSLTRRYSHTEEANREHLSSTHKHALHRKN 508
           S ++    +  T T  +S   NYN     ++S +     +  ++++H S   K +  +KN
Sbjct: 13  STELKKSTRATTTTTSSSQRNNYNDNNQNTSSSSGNKKESSSSSKQHSSKKSKKSNSKKN 72

Query: 509 LHPPAEPE 532
             P  +P+
Sbjct: 73  RSPSPQPQ 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,922
Number of Sequences: 27780
Number of extensions: 375713
Number of successful extensions: 1305
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)