Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F18
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.4  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   3.2  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    27   3.2  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   4.3  

>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 660 AGNINMGSXCSTXXTGTWSHSIRHSGAAGQADYVAAFRGGDPLPRVPSN 514
           +GN    +  +   +G+W H+  HS +  +A  +    G  P+P +P N
Sbjct: 229 SGNHAYHASMAPKRSGSWRHTNFHSTSHPRAASIGNKSGIPPVPTIPPN 277


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 472 STDTTLSATALPLRVRWYPRQWVASTKGGNIIGLSGSSTVPNT 600
           ST+ T   T   + V       V +T GG+ I  +G+STV +T
Sbjct: 204 STEATTVTTTTAVTVTATETYTVTATNGGSTITSTGASTVTST 246


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 588 SGAAGQADYVAAFRGGDPLPRVPSNPQG*GRSRQSC 481
           +G     D +  +   D LP  P NP+G   +  SC
Sbjct: 219 TGIFSSLDDIPTYSASDYLPAYPPNPEGMSSTSSSC 254


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 452 ITYSPSLYPITAALLHFMP---GMIFHFAQTKKMSIPSER 342
           I +SP  YP+T    ++ P   G I  F     +SIP+ R
Sbjct: 475 ILFSPKAYPVTGKNFNYAPVIFGAITIFGLISWLSIPASR 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,480
Number of Sequences: 5004
Number of extensions: 64470
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)