Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F18
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical...    31   1.00 
AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical...    30   1.7  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    28   7.0  
U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protei...    28   9.3  
U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protei...    28   9.3  

>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 524 YHLTRKGRAVADRVVSVLGYACPDITYSPSLYPITAALLHF 402
           + L   G     R++ ++    P+I Y+PS+YP+ + LLHF
Sbjct: 216 FDLKEVGSVKLIRLLLIIERLRPEIVYAPSIYPLCSLLLHF 256


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 524 YHLTRKGRAVADRVVSVLGYACPDITYSPSLYPITAALLHF 402
           + L   G     R++ ++    P+I Y+PS+YP+ + LLHF
Sbjct: 273 FDLKEVGSVKLIRLLLIIERLRPEIVYAPSIYPLCSLLLHF 313


>AF039710-10|AAB96693.2|  393|Caenorhabditis elegans Hypothetical
           protein C46E10.9 protein.
          Length = 393

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 445 YVISGQAYPSTDTTLSATALPLRVRWYPRQWVASTKGGNIIGLSGSSTVPNTV*PCPS 618
           ++I    Y STD T SA A     RW P     S         SG  T+ + +  CP+
Sbjct: 315 FLIHHYYYHSTDLTSSAPASTCSTRWSPMTVSTSESSSTSESSSGMPTLQDPIRRCPN 372


>AL117204-34|CAB55140.2|  348|Caenorhabditis elegans Hypothetical
           protein Y116A8C.40 protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +3

Query: 147 YRI*ICISKFYSLHQSVYHLMTSLILDPLKKSLYLFWMFQSSLNHRAYRFLSVLIHC 317
           Y+  +C    + ++ S++ +MT  I+   K +  +   +  S+ +R   F+ V I+C
Sbjct: 34  YKYLMCYISLFEVYYSIWDMMTEPIVHSYKAAFVVLRDYNGSIFNRDVSFVLVCIYC 90


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 578 PDKPIMLPPFVEATH 534
           PDKP ++PPF+E  H
Sbjct: 486 PDKPDLIPPFIELLH 500


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 578 PDKPIMLPPFVEATH 534
           PDKP ++PPF+E  H
Sbjct: 486 PDKPDLIPPFIELLH 500


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 512 GLDGTRGSGSPPRKAAT*SACPAAP 586
           G DG RGSG+P    A  +A PA P
Sbjct: 207 GADGQRGSGAPGAPGAPGNAGPAGP 231


>U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protein
           10 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 497 RPYPCGLDGTRGSGSPPRKAAT*SACPAAP 586
           +P   G DG RGSG+P    A  +A PA P
Sbjct: 202 QPGAPGQDGQRGSGAPGGPGAPGNAGPAGP 231


>U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protein
           144 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 497 RPYPCGLDGTRGSGSPPRKAAT*SACPAAP 586
           +P   G DG RGSG+P    A  +A PA P
Sbjct: 214 QPGAPGQDGQRGSGAPGGPGAPGNAGPAGP 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,168
Number of Sequences: 27780
Number of extensions: 380717
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)