Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F16
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    29   0.037
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.19 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 752 NWPNDMQTXTFKFGFRMHNSDEMDFVIDKRIYSM---FESGAWDVTALSS 612
           +WP D       FG  +H+ +E++  +DK+ + M     +  WD   + +
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSKWDFKVIKA 224


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -3

Query: 749 WPNDMQTXTFKFGFRMHNSDEMDFVI--DKRIYSM---FESGAWDV 627
           +P D QT   KFG    N D++   +  +K    +   ++SG WD+
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDI 203


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/31 (22%), Positives = 14/31 (45%)
 Frame = -3

Query: 638 AWDVTALSSAVQSQXPWARWKLAWQCSRCLS 546
           AW +     +++S+ PW      W    C++
Sbjct: 82  AWAIFYFFMSMRSELPWGSCNNYWNTKNCVN 112


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 566 ATRASTSPTXPGSAPHWTEPSHPT 637
           A   STSP+ PG       PS P+
Sbjct: 74  AAITSTSPSYPGGGSSSPSPSSPS 97


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 764 MQLDNWPNDMQTXTFKFG 711
           M L+N+P D Q    +FG
Sbjct: 132 MNLENFPMDTQRCPLQFG 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,033
Number of Sequences: 438
Number of extensions: 1747
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)