Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F14
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   141   1e-34
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   138   8e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    41   2e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    27   4.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  141 bits (341), Expect = 1e-34
 Identities = 66/103 (64%), Positives = 79/103 (76%)
 Frame = -3

Query: 632 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 453
           +RE RL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 452 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 324
           +LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 23/46 (50%), Positives = 27/46 (58%)
 Frame = -2

Query: 768 PXXXFXIXSRPFGQRXVXKFXAHTGXTXIAGRFTPGAFXNQIQAAF 631
           P     + +R +G R V KF AHTG T IAGRFTPG F N I   +
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  138 bits (334), Expect = 8e-34
 Identities = 65/101 (64%), Positives = 78/101 (77%)
 Frame = -3

Query: 632 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 453
           +RE RL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 452 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 330
           +LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 26/46 (56%), Positives = 28/46 (60%)
 Frame = -2

Query: 768 PXXXFXIXSRPFGQRXVXKFXAHTGXTXIAGRFTPGAFXNQIQAAF 631
           P     I SRP+G R V KF AHTG T IAGRFTPG F N I   +
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = -3

Query: 659 LLXTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 480
           L+ T  K  +    L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 479 SSHSIGLMWWLLAR 438
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 575 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 465
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 677 DVSHQVLLXTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 504
           + + ++ L      HF   +LL+VL     H   T   Y  I  I   NT+  LRF D
Sbjct: 249 ETAQKIFLSLCFSQHFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 412 FPVTSAGML--WLICSSTVTLKKVKRM 338
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,334
Number of Sequences: 5004
Number of extensions: 52256
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)