Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F13
         (1587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.015
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.027
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.047
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    32   0.19 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   0.62 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   2.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   7.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXPPPPPPPXFXXXXKKK 1449
            PPPPPPP  P      +    PPPPPPP +    K K
Sbjct: 9    PPPPPPP--PGFEPPSQ----PPPPPPPGYVKKRKNK 39



 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXPPPPPPPXFXXXXKKKK 1446
            PPPPPPP            P  PPPPPP      +K K
Sbjct: 10   PPPPPPPGFEP--------PSQPPPPPPPGYVKKRKNK 39



 Score = 31.5 bits (68), Expect = 0.33
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXPPPPP 1482
            PP  PPP  P         P PPPPP
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -3

Query: 1066 GGXPPPPPXGGXXXKXXFFFFXXXXTPPPPXXXGXXKK 953
            G  PPPPP  G         F     PPPP   G  KK
Sbjct: 7    GNPPPPPPPPG---------FEPPSQPPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXPPPPPPP 1476
            PPPPPPP            P PPPPPPP
Sbjct: 761  PPPPPPP-----PGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
 Frame = -2

Query: 1556 PPPPPPXXPXXXXXKKXXPXPPP------PPPP 1476
            PPPPPP            P PPP      PPPP
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXPPPPPPP 1476
            PPPPPPP        +   P P   P P
Sbjct: 776  PPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXP------PPPPPP 1476
            PPPPP    P         P P      PPPPPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXPPPPPP 1479
            P P P P            P PPPPPP
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 1556 PPPPPPXXPXXXXXKKXXPXPPPPPPP 1476
            P P P   P           PPPPPPP
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.047
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
 Frame = -2

Query: 1559 PPPPPPPXX-----PXXXXXKKXXPXPPPPPPP 1476
            PPPPPPP       P           PPPPPPP
Sbjct: 311  PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = -2

Query: 1556 PPPPPPXXPXXXXXKKXXP---XPPPPPPP 1476
            PPPPPP            P     PPPPPP
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = -2

Query: 1559 PPPPP--PPXXPXXXXXKKXXPXPPPPPPP 1476
            PP PP  P   P         P PPP PPP
Sbjct: 230  PPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = -2

Query: 1559 PPP---PPPPXXPXXXXXKKXXPXPPPPPPP 1476
            PPP   PP    P         P PPPPPPP
Sbjct: 167  PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXP 1494
            PPPPPPP  P         P P
Sbjct: 238  PPPPPPPTLPPQSTNTSQLPMP 259



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 1541 PXXPXXXXXKKXXPXPPPPPPP 1476
            P  P     K+  P P PPPPP
Sbjct: 221  PEIPPTYTPKQADPLPAPPPPP 242


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect(2) = 0.62
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 1502 PXPPPPPPP 1476
            P PPPPPPP
Sbjct: 945  PPPPPPPPP 953



 Score = 22.6 bits (46), Expect(2) = 0.62
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 1559 PPPPPPPXXP 1530
            P PPPPP  P
Sbjct: 905  PTPPPPPPLP 914


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = -2

Query: 1559 PPPPPPPXXPXXXXXKKXXPXPPP--PPPP 1476
            P PPPPP            P  PP  PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = -2

Query: 1556 PPPPP---PXXPXXXXXKKXXPXPPPPPPP 1476
            PPPPP   P  P         P  PPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 1541 PXXPXXXXXKKXXPXPPPPPPP 1476
            P  P      K    PPPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPP 1101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,951
Number of Sequences: 5004
Number of extensions: 34976
Number of successful extensions: 438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 895942648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)