Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F06
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   138   7e-34
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    28   1.9  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   2.5  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   3.3  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   7.6  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  138 bits (335), Expect = 7e-34
 Identities = 66/128 (51%), Positives = 88/128 (68%)
 Frame = -1

Query: 765 KNIXVFXVSCEAGXVYPDDVCAX*V*CLASEVR*SNSDEYGPAFQGEKEGMVTMHDILDA 586
           +N+ VF  SCEAG  Y   +C      L                  E + +VTMHD+LDA
Sbjct: 186 RNLAVFWASCEAG-TYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDA 244

Query: 585 QWSYENHKDETYLRRVIKPLEGLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEV 406
           QW Y+N +DE+YLRRVI+PLE LL+ +KRI +KDSAVNA+CYGAK+++PG+LRYE GIEV
Sbjct: 245 QWIYDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEV 304

Query: 405 DQEIVIVT 382
           ++EIV++T
Sbjct: 305 NEEIVLIT 312



 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 33/54 (61%), Positives = 45/54 (83%)
 Frame = -2

Query: 377 KGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 216
           KGEA+A+ +A M+T  +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 314 KGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367



 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = -3

Query: 229 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYN 131
           +KK+   +GKLDKYG+PNENTP +W  SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 637 CRTVLV*VRSSDLRRQASDLXCTHIVRIYXSSLATNXKHPNILV 768
           C+TV + + ++ +      L  + ++     S+ATN KHP +L+
Sbjct: 767 CKTVCLLIETTPMDMIYESLLNSSLLSRLLLSIATNDKHPQVLI 810


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 166 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 23
           PK + N+    N+KK   +GD     +  R A+ A+A D +V    KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 208 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 80
           QG+LD + KP  ++PK+ +++    + K++ ++  G E   ++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 116 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLXV*GFFSVRLSVRDPIFWGTCLVPL*H 289
           RF+L+   D + + P  W   ++ + +F + P  +     +R   RDP+ W   L+   H
Sbjct: 62  RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121

Query: 290 A 292
           A
Sbjct: 122 A 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,615
Number of Sequences: 5004
Number of extensions: 61013
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)