Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_F06
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 131 6e-31
03_03_0094 + 14378953-14380728 128 4e-30
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 38 0.007
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 30 2.6
12_01_0400 + 3169597-3170504,3170510-3171269 29 3.5
01_01_0519 - 3817369-3817704 29 4.6
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 8.0
>07_03_1408 - 26353389-26355191
Length = 600
Score = 131 bits (317), Expect = 6e-31
Identities = 58/129 (44%), Positives = 90/129 (69%)
Frame = -1
Query: 768 NKNIXVFXVSCEAGXVYPDDVCAX*V*CLASEVR*SNSDEYGPAFQGEKEGMVTMHDILD 589
++++ VF +SCEAG Y +C L GE++ MVTMHD++D
Sbjct: 224 DRHLAVFWISCEAG-TYVRTLCVHLGLLLGVGAHMQELRRVRSGILGEQDNMVTMHDVMD 282
Query: 588 AQWSYENHKDETYLRRVIKPLEGLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIE 409
A+W+ +N+ DETYLRR++ PLE LL ++KR+ +KDSAVNA+CYGAK+++PG+LR+E+ I+
Sbjct: 283 ARWAMDNYNDETYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDID 342
Query: 408 VDQEIVIVT 382
V +E+V++T
Sbjct: 343 VGEEVVLMT 351
Score = 88.6 bits (210), Expect = 5e-18
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -2
Query: 377 KGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 213
KGEA+A+ +A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 353 KGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 407
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3
Query: 229 RKKSSYXQGKLDKYGKPNENTPKEWLNS 146
+KK +G LDK+GKPNE TP EW+ +
Sbjct: 402 KKKKMVAEGLLDKHGKPNEKTPAEWIRN 429
>03_03_0094 + 14378953-14380728
Length = 591
Score = 128 bits (310), Expect = 4e-30
Identities = 58/129 (44%), Positives = 88/129 (68%)
Frame = -1
Query: 768 NKNIXVFXVSCEAGXVYPDDVCAX*V*CLASEVR*SNSDEYGPAFQGEKEGMVTMHDILD 589
++++ VF +SCEAG Y +C L GE + MVTMHD++D
Sbjct: 228 DRHLAVFWISCEAG-TYVRTLCVHLGLLLGVGAHMQELRRVRSGILGETDNMVTMHDVMD 286
Query: 588 AQWSYENHKDETYLRRVIKPLEGLLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIE 409
A+W+ +N DE+YLRR++ PLE LL ++KR+ +KDSAVNA+CYGAK+++PG+LR+E+ IE
Sbjct: 287 ARWAMDNFNDESYLRRIVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIE 346
Query: 408 VDQEIVIVT 382
V +E+V++T
Sbjct: 347 VGEEVVLMT 355
Score = 88.6 bits (210), Expect = 5e-18
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = -2
Query: 377 KGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILI 213
KGEA+A+ +A MTT+ MA+CDHG AK+KRV+M+RDTYPRKWGLGP A +KK ++
Sbjct: 357 KGEAIAIGIAEMTTAVMATCDHGAVAKIKRVVMDRDTYPRKWGLGPVALKKKKMV 411
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -3
Query: 229 RKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEG--SRKRTASTANA 56
+KK +G LDK+GKPNE TP EWL + V P GD + G +
Sbjct: 406 KKKKMVAEGLLDKHGKPNEKTPSEWLRNAV------LPAGGDAMIAGIAAAPEPEKPKVK 459
Query: 55 EDPDVSIEVKQE 20
E+ DV+ E K++
Sbjct: 460 EEADVAEETKEK 471
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 765 KNIXVFXVSCEAGXVYPDDVCAX*V*CLASEVR*SNSDEYGPAFQGEKEGMVTMHDILDA 586
+++ VF +SCEAG Y +C L GE++ MVTMHD++DA
Sbjct: 199 RHLAVFWISCEAG-TYVRTLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTMHDVMDA 257
Query: 585 QWSY 574
+ +
Sbjct: 258 RQEF 261
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -3
Query: 280 WNETRTPENG-VSDRKPHRKKSSY----XQGKLDKYGKPNENTPKEWLNSYVNYNVKKEP 116
W P+ V+D KPH +K+SY GKL + + + P E + + +K
Sbjct: 248 WRPISHPKRAAVTDAKPHTRKASYAMETESGKLKRNSRRSSAAPVESSQTNIAMETEKSR 307
Query: 115 ENGDGVEEGSRKRTASTANA 56
N RK T+STA++
Sbjct: 308 RN-------PRKFTSSTADS 320
>12_01_0400 + 3169597-3170504,3170510-3171269
Length = 555
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 229 CEAFGPRPHFLGYVSRSIMTRLSFAATP 312
CEA P H Y +R + R+S AATP
Sbjct: 212 CEATSPVDHLAYYFARGLKLRISGAATP 239
>01_01_0519 - 3817369-3817704
Length = 111
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 664 IELRRVRS-GISGREGRHGHDARHPRC 587
+ELR RS G+ G + RHG A H RC
Sbjct: 40 LELRHSRSVGLIGLQRRHGDGAGHTRC 66
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = -3
Query: 277 NETRTPENGVSDRKPHRKKSSYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPE---NG 107
+E + + G + P RK+SS G+ + K ++P E L + + K+PE N
Sbjct: 309 SELKKAQAGKTIGCPKRKRSSKNAGENKRKNKGFPSSPNEGLYLRRSKRLTKQPEQPIND 368
Query: 106 DGVEEGSRKRTASTANAEDPDV 41
D V++ + + + N++ PD+
Sbjct: 369 DPVQQPA--ASPNQYNSDPPDI 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,229,788
Number of Sequences: 37544
Number of extensions: 411710
Number of successful extensions: 1060
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -