Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_F05
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.36
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.5
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 30 1.9
07_03_0846 - 21983581-21986055 29 3.4
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.4
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 29 4.5
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.5
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.9
01_06_0695 - 31292622-31293317 28 7.8
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 79 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 207
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 347 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 213
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = -1
Query: 583 EAKFAKRWIVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILL 458
EA A+ VHP+ + VR S DRL+ PY L VA +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 205 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 354
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 434 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 336
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 652 LWQPSVHSDVAF*SFDVGXSYHCEAKFAKRWIVHPSKGNVSWVR--PS*DRL 503
LW+ V S A S G C+ + W +HP ++ VR P DRL
Sbjct: 1109 LWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHPEHVSILLVRLMPQLDRL 1160
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 706 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 599
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 494 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 330
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 329 GKDMLTVEPRESGGSK 282
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 31 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 165
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,520,187
Number of Sequences: 37544
Number of extensions: 485898
Number of successful extensions: 1341
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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