Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F04
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0680 + 5217633-5219072                                           29   3.1  
08_01_0569 - 5066760-5067179                                           29   4.1  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    29   5.4  
02_02_0527 - 11191601-11192872                                         28   7.2  

>01_01_0680 + 5217633-5219072
          Length = 479

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 368 PRVSRVQAAAARHPRRSGASSPTSLILVTSL 276
           PR +   A AA  PRRS ASS   L+L  +L
Sbjct: 25  PRTTTTTAGAAPAPRRSSASSRLHLLLTAAL 55


>08_01_0569 - 5066760-5067179
          Length = 139

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 392 RLGEAGSAPRVSRVQAAAARHPRRSGASSPTSLILVTSL 276
           RLG A +A  V+ ++ A  R  RR+G+S     +L+ +L
Sbjct: 29  RLGMASAAVAVAALEGAQGRRRRRAGSSGAGGAVLLPAL 67


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 431 AFISILWQMSVSSRLGEAGSAPR---VSRVQAAAARHPRRSGA 312
           A + ++W  +  +R+GE G  P    VSR ++    H  ++GA
Sbjct: 279 AIVKVIWDNNSKNRIGEEGGFPHLIYVSREKSPGHHHHYKAGA 321


>02_02_0527 - 11191601-11192872
          Length = 423

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 669 RIYSMFESGAWDVTDLSSAVQSQDPWRGGSSRG 571
           ++  +  +G WDV   S+ ++    WR   SRG
Sbjct: 215 KVEKILRAGVWDVAQTSAPIELPAHWRRSLSRG 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,153
Number of Sequences: 37544
Number of extensions: 288159
Number of successful extensions: 1231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)