Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F03
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350...    34   0.17 
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956...    33   0.39 
08_01_0059 - 394001-394708                                             31   0.91 
07_03_1160 - 24430240-24431268                                         29   3.7  
01_06_0581 - 30386018-30386440                                         29   4.8  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   6.4  
09_02_0327 - 7284829-7284889,7284946-7286126                           28   8.5  
07_03_1751 - 29215074-29216270                                         28   8.5  

>01_07_0021 -
           40533864-40534583,40534779-40534814,40534909-40535048,
           40535837-40535922,40536430-40536653,40536770-40536865,
           40538766-40538833,40539945-40540055,40540799-40540955
          Length = 545

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +1

Query: 724 SXPKXPXPXXXXXXFX*TXXXXPHPXPXSAPXPGXPPXRXXPXVPPRP 867
           S P+ P P      F        HP P  +  P  PP    P VPP P
Sbjct: 413 SRPQSPPPPLPSDAFEQPPPPPEHPPPPESTSPPPPPTSDPPPVPPPP 460


>04_04_1641 +
           34993807-34994589,34994924-34995022,34995521-34995648,
           34996095-34996235,34996456-34996542,34996627-34996780,
           34998569-34998628,34999019-34999447,34999524-34999819,
           35000278-35000407,35000690-35001187
          Length = 934

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +1

Query: 730 PKXPXPXXXXXXFX*TXXXXPHPXPXSAPXPGXPPXRXXPXVPPRP 867
           PK   P      F       P P P  +P P  PP R  P  PP P
Sbjct: 21  PKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPPPNP 66


>08_01_0059 - 394001-394708
          Length = 235

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 790 PHPXPXSAPXPGXPPXRXXPXVPPRP 867
           P P P  AP P  PP R  P   PRP
Sbjct: 17  PPPPPRRAPPPPSPPIRPPPPPTPRP 42


>07_03_1160 - 24430240-24431268
          Length = 342

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 796 PXPXSAPXPGXPPXRXXPXVPPRP 867
           P P   P P  PP +  P VPP P
Sbjct: 53  PTPDVVPNPNQPPLQPTPGVPPLP 76


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 SGVRSQVLERLEMRLRSGGGGARRQ 346
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 790 PHPXPXSAPXPGXPPXR--XXPXVPPRP 867
           P P P  AP P  PP +    P  PPRP
Sbjct: 616 PPPRPPGAPPPPPPPGKPGGPPPPPPRP 643


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 366 PPXPXXXPPXTPPXXRLYARPTRGXAARLXQXGSRP 473
           PP P   PP  PP  R Y R   G    +    S P
Sbjct: 55  PPPPPPPPPPPPPRGRRYYRRVSGDDLDVPSCSSSP 90


>07_03_1751 - 29215074-29216270
          Length = 398

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/61 (32%), Positives = 21/61 (34%)
 Frame = -3

Query: 866 GRGGTXGXYLXGGXPGXGAXXGXGCGXXXXVYXKXXXXXXGXGXLGXDXXGXXXXXRXVG 687
           G GG  G  L GG  G G   G G G    V         G G LG    G       +G
Sbjct: 172 GAGGGAGGGLGGGS-GGGGGLGGGAGGGAGVGGGAGGGAGGGGGLGGGAGGGAGGGGGLG 230

Query: 686 G 684
           G
Sbjct: 231 G 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,635,461
Number of Sequences: 37544
Number of extensions: 245619
Number of successful extensions: 1704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1602
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)