Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_F01
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.010
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 35 0.013
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 35 0.017
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.21
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.28
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.49
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 4.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.5 bits (78), Expect = 0.010
Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Frame = +3
Query: 543 GXXPXXPXXXPXPPXXXPPPRN--------PPXXTPXARXXPRSVXPXPXVSXXPALPPX 698
G P P PP PPPR+ PP + A P + P PALPP
Sbjct: 349 GSIPLPPQGRSAPPP--PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406
Query: 699 XAHRRIXXPPTPXXPXPLPP 758
R PP P P LPP
Sbjct: 407 GNASRTSTPPVP-TPPSLPP 425
Score = 35.1 bits (77), Expect = 0.013
Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Frame = +3
Query: 573 PXPPXXXPPPRNPPXXTPXARXXPRSVXPXPXVSXXPAL----PPXXAHRRIXXPPTPXX 740
P PP PPPR+ + RS P P P+ PP + R + PP P
Sbjct: 337 PPPP---PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Query: 741 PXP------LPPLHSXSXYXXHXAAXPXXTXPHXXXXXPXXSPXXXP 863
P LPPL + S P P P +P P
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 29.5 bits (63), Expect = 0.65
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = +3
Query: 552 PXXPXXXPXPPXXXPPPRNP--PXXTPXARXXPRSVXPXPXV-SXXPALPPXXAHRRIXX 722
P P P P PP P P P A P S P + + PA PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP----AA 473
Query: 723 PPTPXXPXPLP 755
P P P P P
Sbjct: 474 PAPPPAPAPAP 484
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/79 (27%), Positives = 22/79 (27%)
Frame = +3
Query: 525 PXXIXXGXXPXXPXXXPXPPXXXPPPRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXA 704
P I P P PP PP P A P PA PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 705 HRRIXXPPTPXXPXPLPPL 761
I PP P PPL
Sbjct: 452 SAPI-APPLPAGMPAAPPL 469
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Frame = +1
Query: 508 PEXPXXPXXSXXX-PXRXXPXXXXSXPXXPPXPETXXXXXXXXAXXHARXCLRPXSXXXP 684
P P P + P P P PP P + A A L P + P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 685 PXRXPXPTA 711
P P P A
Sbjct: 478 PAPAPAPAA 486
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 35.1 bits (77), Expect = 0.013
Identities = 27/68 (39%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -3
Query: 760 RGGRGXGXXGVGGXXXRRWAXXGGRAGXXETXGXGXTERGXXRAXGVXXGGFLGG-GXXX 584
RGGRG G GG R GGR G G G RG R GG GG G
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGG---ARGGG---RGGARGGRGGRGGARGGRGGSS 61
Query: 583 GGXGXXXG 560
GG G G
Sbjct: 62 GGRGGAKG 69
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.7 bits (76), Expect = 0.017
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Frame = +3
Query: 552 PXXPXXXPXPPXXXPP-PRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPP 728
P P PP PP P PP A P P P PA P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 729 TPXXPXPLPP 758
P P+PP
Sbjct: 190 LPSAVPPMPP 199
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = +3
Query: 561 PXXXPXPPXXXPP-PRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPPTPX 737
P P P PP P + P A P S+ P + PP PP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 738 XPXPLPPL 761
P PPL
Sbjct: 200 KVPP-PPL 206
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = +3
Query: 579 PPXXXPPPRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPP--TPXXPXPL 752
PP PP P PR P P + P +P PP P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 753 PP 758
PP
Sbjct: 184 PP 185
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = +3
Query: 552 PXXPXXXPXPPXXXPPPRNPPXXT---PXARXXPRSVXPXPXVSXXPAL 689
P P P P PPP P P A P +V P P P L
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/70 (27%), Positives = 20/70 (28%)
Frame = +3
Query: 594 PPPRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPPTPXXPXPLPPLHSXS 773
PPP P P P V P + P PP PP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 774 XYXXHXAAXP 803
Y A P
Sbjct: 792 YYAPAPQAEP 801
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.28
Identities = 18/68 (26%), Positives = 20/68 (29%)
Frame = +3
Query: 552 PXXPXXXPXPPXXXPPPRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPPT 731
P P P PP P P V P P S P +P PP+
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 732 PXXPXPLP 755
P P P
Sbjct: 1215 TAPPVPTP 1222
Score = 30.7 bits (66), Expect = 0.28
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Frame = +3
Query: 573 PXP-PXXXPPPRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPPTPXXPXP 749
P P P PP PP P V P P S P +P A PP P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA----GLPPVPVPTAK 1235
Query: 750 LPPLHSXS 773
PP+ + S
Sbjct: 1236 APPVPAPS 1243
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Frame = +3
Query: 552 PXXPXXXPXP-PXXXPPPRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPP 728
P P P P PP P P +V P P S P +P + PP
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP----SVAAPP 1132
Query: 729 TPXXPXPLPPLHSXS 773
P P PP+ S
Sbjct: 1133 VP-VPSGAPPVPKPS 1146
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Frame = +3
Query: 552 PXXPXXXPXPPXXXPPPRNPPXXTPX-ARXXPRSVXPXPXV----SXXPALPPXXAHRRI 716
P P PP P PP P A P+ P V S P +P A
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 717 XXPPTPXXPXPLP 755
PP+ P P P
Sbjct: 1191 VPPPSEAPPVPKP 1203
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.49
Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Frame = +3
Query: 543 GXXPXXPXXXPX--PPXXXPPPRNPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRI 716
G P P P P PP + P P P SV P P PA PP +
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPP----PMSVPPPPSAPPMPAGPPSAPPPPL 1735
Query: 717 XXPPTPXXPXP 749
P P P
Sbjct: 1736 PASSAPSVPNP 1746
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 612 PXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPPTPXXPXPLPP 758
P TP R P+S P + P PP PP P P PP
Sbjct: 1686 PVSTPPVR--PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -3
Query: 763 WRGGRGXGXXGVGGXXXRRWAXXGGRAGXXETXGXGXTERGXXRA--XGVXXGGFLG 599
+RGGRG G GG R GG G G G RG R G GGF G
Sbjct: 143 FRGGRGGSRGGFGG--NSRGGFGGGSRG-----GFGGGSRGGSRGGFRGGSRGGFRG 192
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 552 PXXPXXXPXPPXXXPPPRNPPXXTP 626
P P P PP PP + PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +3
Query: 606 NPPXXTPXARXXPRSVXPXPXVSXXPALPPXXAHRRIXXPPTP 734
N P P P + P P V P PP + PP P
Sbjct: 719 NSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,027
Number of Sequences: 5004
Number of extensions: 16999
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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