Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_E23
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 177 1e-45
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 175 6e-45
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 132 4e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 82 1e-16
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 81 3e-16
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 38 0.002
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 37 0.004
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 32 0.088
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.27
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 30 0.36
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.36
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.62
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.82
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 28 1.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 3.3
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 3.3
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 4.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 4.4
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 4.4
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.8
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.8
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 7.6
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 7.6
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 177 bits (432), Expect = 1e-45
Identities = 83/138 (60%), Positives = 106/138 (76%)
Frame = -1
Query: 653 QIEVTFDIDANGILNVSAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQ 474
QIEVTFD+DANGILNVSA+EK K ITIT D GRLSKEEI+RMV+EAEKY+ ED+ +
Sbjct: 471 QIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAE 530
Query: 473 KETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEY 294
IQAKN LESY +S++++++D LK+K+ SDK+ I +TI+WLD N A K+EY
Sbjct: 531 TSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEY 590
Query: 293 EHKQKELEGICNPIITKM 240
E KQKELEG+ NPI+ K+
Sbjct: 591 EDKQKELEGVANPIMAKI 608
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 175 bits (426), Expect = 6e-45
Identities = 82/138 (59%), Positives = 106/138 (76%)
Frame = -1
Query: 653 QIEVTFDIDANGILNVSAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQ 474
QIEVTFD+DANGILNVSA+EK K ITIT D GRLSKEEI+RMV EAEKY+ ED+ +
Sbjct: 471 QIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAE 530
Query: 473 KETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEY 294
IQAKN LESY +S++++++D LK+K+ SDK+T+ +TI+WLDSN A K+E+
Sbjct: 531 SGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEF 590
Query: 293 EHKQKELEGICNPIITKM 240
E KQKELE + NPI+ K+
Sbjct: 591 EAKQKELESVANPIMAKI 608
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 132 bits (320), Expect = 4e-32
Identities = 65/141 (46%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Frame = -1
Query: 653 QIEVTFDIDANGILNVSAIEKSXX-KEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDK 477
QIEVTF++DANG+L VSA++KS K + + I D GRLS+E+IERMV EAE++ ED
Sbjct: 500 QIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKI 559
Query: 476 QKETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILDKCNDTIKWLD-SNQLADK 303
KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD D +WL+ + A K
Sbjct: 560 LKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASK 619
Query: 302 EEYEHKQKELEGICNPIITKM 240
EE+E ++++L+ + +PI K+
Sbjct: 620 EEFEDQRQKLDAVVHPITQKL 640
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Frame = -1
Query: 653 QIEVTFDIDANGILNVSAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQ 474
++E TF++DANGIL V+A+EK+ + I IT G LS +I+ M+ A+K++ +D
Sbjct: 476 ELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDF 535
Query: 473 KETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTI---LDKCNDTIKWLDSN 318
+ ++AK+ LESY ++++T+ + + K+ DK I L +C ++ D+N
Sbjct: 536 AKKLEAKSQLESYISNIETTISEPNVMMKLKRGDKSKIEAQLAECMSQLELEDTN 590
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 80.6 bits (190), Expect = 3e-16
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Frame = -1
Query: 653 QIEVTFDIDANGILNVSAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQ 474
QIEV+FD+DA+GI+NVSA +K+ K+ IT+ G L+ EIE MV +AEKYR D +
Sbjct: 514 QIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMAR 572
Query: 473 KETIQAKNALESYCFSMKSTME--DEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKE 300
KE I+ N ES C ++S ++ +KL ++ + + I D K ++ E
Sbjct: 573 KEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEGITSE 632
Query: 299 EYEHKQKELE 270
+ + K E++
Sbjct: 633 DMKKKIDEIQ 642
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 37.5 bits (83), Expect = 0.002
Identities = 33/135 (24%), Positives = 57/135 (42%)
Frame = -1
Query: 605 SAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFS 426
S+I+K K + T+ + + E+ + E EK + +A+ A
Sbjct: 206 SSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSAQ 265
Query: 425 MKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIIT 246
+ +E EK KEK D D++ DT+ D NQ+ D+ E K+ + E + P +
Sbjct: 266 NSAKLEKEKAKEKQKDKDQE------QDTVS--DKNQI-DEIEKGQKEVDEEPVSEPTTS 316
Query: 245 KMXPGCRRSPRRYAG 201
+ P + P R G
Sbjct: 317 PILPPKNQEPIRMGG 331
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 36.7 bits (81), Expect = 0.004
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = -1
Query: 593 KSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKS 417
K K ++++ RL E +E+ EAE DK ET+ KNALE Y + ++
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRA 592
Query: 416 TMED--EKLKEKISDSDKQTILDKCNDTIKWL-DSNQLADKEEYEHKQKELEGICNPI 252
++D + S + +L K D WL + + K Y K ++L + PI
Sbjct: 593 KLDDIYAPFTNEEESSKFKEMLTKAED---WLYEEGEDTTKAVYTAKLEDLMRVGGPI 647
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 32.3 bits (70), Expect = 0.088
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = -1
Query: 533 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 354
EE++ +NEA+K NE ++ I+ +L+ +++ +++ + + S KQT+++
Sbjct: 19 EELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLIN 78
Query: 353 K 351
K
Sbjct: 79 K 79
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.27
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = -1
Query: 548 GRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDK 369
GR + + N+ E + DDKQ + KN+LE+ M+ + E K D ++
Sbjct: 1260 GRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEG-DAKTGDDNE 1318
Query: 368 QTILDKCNDTIK 333
LDK D K
Sbjct: 1319 MEDLDKMEDLEK 1330
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 629 DANGILNVSAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 456
D LNVS + S +E +T + R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 455 KNA 447
+A
Sbjct: 118 LDA 120
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.36
Identities = 23/90 (25%), Positives = 43/90 (47%)
Frame = -1
Query: 539 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTI 360
+KEE+E +NE + E ++Q + ++N ++ +K +E EKLKE ++ D
Sbjct: 1606 TKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVE-EKLKENSANFDV--- 1661
Query: 359 LDKCNDTIKWLDSNQLADKEEYEHKQKELE 270
K + + A YE K ++L+
Sbjct: 1662 --KLKKVVAETEFRSKAKISVYEKKTRDLQ 1689
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.5 bits (63), Expect = 0.62
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -1
Query: 395 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKEL-EGICNPIITKMXPG--C 228
+EKI +++TI D K + + ++ EEY KQKEL E + P ++ P
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEVELQPNELA 486
Query: 227 RRSPRRYAGL 198
R ++Y GL
Sbjct: 487 RERFKKYRGL 496
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.82
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = -1
Query: 545 RLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKL-KEKISDSDK 369
R +E I + EAE+ + E ++Q+ Q K E + K E EKL KE+I ++
Sbjct: 84 RAQEERIRQ--KEAERLKREKERQQRE-QEKKLREQEKIAAKKMKELEKLEKERIRLQEQ 140
Query: 368 QTILDKCNDTIKWLDSNQLADKEEYEHKQKE 276
Q ++ + ++ + Q +E+ +K+++
Sbjct: 141 QRRKEERDQKLREKEEAQRLRQEQILNKERQ 171
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/86 (19%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = -1
Query: 533 EEIERMVNEAEKYRNEDDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 357
+++E+M +K ++E+ ++ ETI Q + +E ++S +E+E +KE + +
Sbjct: 491 QKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS-LEEESIKESSATQQNENQH 549
Query: 356 DKCNDTIKWLDSNQLADKEEYEHKQK 279
+ + + + D + + K+K
Sbjct: 550 KRSSRKLLYEDKQAIQEAHTINTKRK 575
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -1
Query: 524 ERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKC- 348
E ++EK ++ K + KNA ++ M DE+ E S K+ K
Sbjct: 100 EEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSK 159
Query: 347 NDTIKWLDSNQLADKEEYEHKQKE 276
+D + LD + E+ + K+K+
Sbjct: 160 DDGSEALDDGDIESSEKDKKKKKK 183
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 548 GRLSKEEIERMVNEAEKYRNEDD 480
G LSKEE+ER V +A K N D
Sbjct: 526 GTLSKEELERRVYDAAKLANAYD 548
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 518 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 414
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/113 (15%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = -1
Query: 611 NVSAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYR-NEDDKQKETIQAKNALESY 435
+ ++ E ++D ++ + R S + + +++E + ++KQ + + N +
Sbjct: 12 DANSTEVDAAEQDAASVKINSTRASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPND 71
Query: 434 CFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 276
K +E + ++++DK+ D + + D+N+ +++E + ++ E
Sbjct: 72 TTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDE 124
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/88 (23%), Positives = 35/88 (39%)
Frame = -1
Query: 515 VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTI 336
+NE + Y + + Q +T + L S C + S L + D + +L C I
Sbjct: 830 INETDNYDDNETTQSDTATSYEQLASVCVNELS--GKNVLFFYFLEDDSEKLLKACQHFI 887
Query: 335 KWLDSNQLADKEEYEHKQKELEGICNPI 252
DS + ++E K + I N I
Sbjct: 888 CVKDSIKRLGDNKFEDKSLRICTIPNSI 915
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 608 VSAIEKSXXKEDXITITXDXGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 447
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1
Query: 488 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWL 327
E DK ET+ K A+ S+ +++++++ K+S D L+ CN+ + L
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = -1
Query: 536 KEEIERMVNEAEKYRNEDD---------KQKETIQAKNALESYCFSMKSTMEDEKLKEKI 384
KE ER+ E + NED K+K IQ KN+ + + ST E K+ I
Sbjct: 487 KETPERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRVYEMPKDTI 546
Query: 383 SDSDKQTILDKCND 342
K +I + +D
Sbjct: 547 PSRFKTSISTEVHD 560
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 533 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQT 363
+EIE M + + + D + + N + CFS +ED K KE +SD K +
Sbjct: 215 KEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSF---LEDAKTKEGLSDEMKSS 268
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -1
Query: 545 RLSKEEIERMVNEAEKYRNEDDKQKETIQAK-NALESYCFSMKSTMEDEKLKEKISDSDK 369
+L++E +ER+ E ++YR + + E K +LE ++ + L+ + D
Sbjct: 950 KLAEEMVERVKTEYDEYRLQTSESLEKNHLKITSLEQRIVILQDEIASSSLRCENITKDS 1009
Query: 368 QTILDKCNDTIKWLDSNQLAD--KEEYEHKQKE 276
+T + + K L +N+L+ E +H +KE
Sbjct: 1010 ETRVALLLEENKHL-NNELSSHRNAEKQHLEKE 1041
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 539 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 417
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 485 DDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLA 309
D ++E I A AL + E+ I +K T+ D+ NDT +WLD +L
Sbjct: 181 DSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLG 237
Query: 308 DK 303
DK
Sbjct: 238 DK 239
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = -1
Query: 536 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 357
+++I + + + E RNE+ ++++ ++ ESY ++ E ++ S K T +
Sbjct: 391 EDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSV 450
Query: 356 D 354
D
Sbjct: 451 D 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,271
Number of Sequences: 5004
Number of extensions: 37403
Number of successful extensions: 173
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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