Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_E22
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 118 1e-27
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 118 1e-27
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 3.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.2
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.5
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.3
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 118 bits (283), Expect = 1e-27
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Frame = -2
Query: 734 GTXEDKVKWARXHLGEPIPVDSVFAQDEMIDCIGVTKXKDTK-VSLLVGTQRSYPVRHTK 558
G+ DKV+WAR H + + + S F Q+EMID IGVT+ K + + GT+R P + +
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 557 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 414
GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = -3
Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 118 bits (283), Expect = 1e-27
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Frame = -2
Query: 734 GTXEDKVKWARXHLGEPIPVDSVFAQDEMIDCIGVTKXKDTK-VSLLVGTQRSYPVRHTK 558
G+ DKV+WAR H + + + S F Q+EMID IGVT+ K + + GT+R P + +
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 557 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 414
GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = -3
Query: 391 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 495 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 349
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 471 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 331
SP+ + L+Y E + K + + + LRNPL R++VSP
Sbjct: 63 SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 378 SVDALFLITLPSFLWIPW 431
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 718 LSSMVPR*VGFHNVSLFCRCLTAHLSVAMT 807
L+ +P+ V F N +F C+ +LS +T
Sbjct: 433 LNGTIPKNVDFENQHIFTACVEIYLSYCIT 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,280
Number of Sequences: 5004
Number of extensions: 71875
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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