Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_E22
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 126 3e-29
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 126 3e-29
07_01_0761 + 5849466-5850677 29 4.4
06_03_0915 - 25929433-25930893 29 5.8
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 7.6
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 28 7.6
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 126 bits (303), Expect = 3e-29
Identities = 60/101 (59%), Positives = 72/101 (71%)
Frame = -2
Query: 734 GTXEDKVKWARXHLGEPIPVDSVFAQDEMIDCIGVTKXKDTKVSLLVGTQRSYPVRHTKG 555
GT DKV + + IPVD+VF +DEMID IGVTK K + + P + +G
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
Query: 554 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 432
LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 249 LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 102 bits (245), Expect = 3e-22
Identities = 66/171 (38%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Frame = -1
Query: 627 QGQGYKGVTSRWHTKKLPRKTHQGS*ESCLHWSLASF*GVVHCSSCWSE-RLSSPY*NEQ 451
+G+GY+GV +RW +LPRKTH+G + V C W R+S
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRK-------------VACIGAWHPARVSYTVARAG 271
Query: 450 ENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSPI-------MVK*TTTL**XK 292
+N + E K++ K+ K+ C +++P+ +VK + K
Sbjct: 272 QNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLM--IK 329
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 139
GCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 330 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -3
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 126 bits (303), Expect = 3e-29
Identities = 60/101 (59%), Positives = 72/101 (71%)
Frame = -2
Query: 734 GTXEDKVKWARXHLGEPIPVDSVFAQDEMIDCIGVTKXKDTKVSLLVGTQRSYPVRHTKG 555
GT DKV + + IPVD+VF +DEMID IGVTK K + + P + +G
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248
Query: 554 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 432
LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 249 LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 109 bits (263), Expect = 2e-24
Identities = 70/179 (39%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Frame = -1
Query: 627 QGQGYKGVTSRWHTKKLPRKTHQGS*ESCLHWSLASF*GVVHCSSCWSE-RLSSPY*NEQ 451
+G+GY+GV +RW +LPRKTH+G + V C W R+S
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRK-------------VACIGAWHPARVSYTVARAG 271
Query: 450 ENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSPI-------MVK*TTTL**XK 292
+N + E K++ K+ K+ C +++P+ +VK + K
Sbjct: 272 QNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLM--IK 329
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
GCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 330 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -3
Query: 388 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>07_01_0761 + 5849466-5850677
Length = 403
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -2
Query: 644 DCIGVTKXKDTKVSLLVGTQRSYPVRHTKGLRKVACI--GAWHPSRVSFTVARAGQKGYH 471
D V+ +D V+LLVG R V V+ + G HP SFT+ RA
Sbjct: 118 DTDAVSSARDG-VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGE 176
Query: 470 HR 465
H+
Sbjct: 177 HK 178
>06_03_0915 - 25929433-25930893
Length = 486
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 332 GETSHRCNGFLRQIILSRCIVFNNFAILFVDSLVQYDRFSCSFQY 466
GE H+ G I+ C++ NN +L V ++ D S S ++
Sbjct: 138 GEVVHKALGRPASIVAQMCVIINNAGVLIVYLIIIGDVMSGSLKH 182
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 345 IGVMDFSDRSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 476
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 1 FFFFFFALSNVYFHGLHLRL 60
FFFFFF +N+ FH L+ L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,503,388
Number of Sequences: 37544
Number of extensions: 484101
Number of successful extensions: 1195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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