Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_E21
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 4.2
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 26 7.3
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 9.7
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.7
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 9.7
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 9.7
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 9.7
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 9.7
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.7
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 40 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDPRSRDARVKKKNR 195
++L + + S +E ST+YS P E PD + + V+ KN+
Sbjct: 230 IALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNK 281
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +1
Query: 43 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDPRSRDARVKKKNR*HRSPRSKW 222
S+N ++H L T+ + S S H E P P A +KK N+ P S
Sbjct: 534 SINIAEHTPVLKHTSSLLDHHSPLATSSSEHEMEATPSP----ALLKKTNKRRELPSSLT 589
Query: 223 ASTSR 237
+R
Sbjct: 590 KKNTR 594
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +3
Query: 546 MGEQSNAWRILLRNDRKSRHRRIKKQRRYERLAATSQLSPGGNFSGTSC*KLFILKDR*A 725
+GE ++ W +L S + K +R LAA ++ +P N ++ + DR
Sbjct: 401 VGENNDFWNRMLHRSHLSTMAALHKSQRSHDLAA-NEHAPILNPKNSALNPRLVTNDRVK 459
Query: 726 VLSQSLCVLKSGSXSFA 776
V S SL +G S +
Sbjct: 460 VKSPSLIQSSTGYGSMS 476
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 474 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 325
CD+ + S G L H + R GG + + + N+ SK E +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +1
Query: 64 DAALPSTTPRQERKSSTDYSEPRHRTELYPDPRSRDARVKKKNR 195
D S+ E S DY + + +P P S+ VK+ R
Sbjct: 28 DPMSSSSNSSSEENSDDDYEKTISSKKRHPRPNSKGVNVKRSRR 71
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 49 NRSQHDAALPSTTPRQERK--SSTDYSEPRHRTELYPDPRSRDARVKKKNR*HRSPRSKW 222
+R DA+ R++RK SS S+ + T DP+ + KKK + H+ +
Sbjct: 151 DRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKES 210
Query: 223 ASTSR 237
+S R
Sbjct: 211 SSKKR 215
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 113 VDDFRSWRGVVLGRAASCCDLLRLS 39
VD FR W + SC DLL+LS
Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/82 (28%), Positives = 33/82 (40%)
Frame = +1
Query: 25 SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDPRSRDARVKKKNR*HR 204
S + S SQH L P E+KS D S PR + + + +K+K R +
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFF-----SKSNLKRKYRYLK 187
Query: 205 SPRSKWASTSRLAF*MRNATSK 270
+P W L F +N K
Sbjct: 188 NP-DAWNLPPSLQFIPKNLNRK 208
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 402 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 277
A A+ +A A +AEA E+ K+++ EP+++ +K+
Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,464
Number of Sequences: 5004
Number of extensions: 69753
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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