Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E18
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.66 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
 Frame = +1

Query: 310 SRPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRRYSHTEEANREHLSSTHKH 489
           SRP     S   LP     T T  T+  A    T +T+ T            HL + H H
Sbjct: 91  SRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHH 150

Query: 490 --ALHRKNLHPPAEPEHRRIARHER 558
             +   ++ H P + + ++  R ++
Sbjct: 151 LQSTAVQDHHRPYQQQQQQQQRQQQ 175


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +1

Query: 442 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 558
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 496  HRKNLHPPAEPEHRRIARHERTGRLILQVTTTSDVSIFLP 615
            H + LH P +     ++R    G+  ++V   SD   F+P
Sbjct: 1482 HNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVP 1521


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 542 SPDTNAPDVLSYRSRRLQMCQFFFPTETCLL 634
           S D   PD+  Y S  +   Q   P  TCL+
Sbjct: 121 SDDIWVPDISVYNSGDMTFDQTGIPPTTCLV 151


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 236 TGPPNDEITPPARTADIGAPRSGCTC 159
           T P   EI P  +T D G P +  TC
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPAT-FTC 329



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +1

Query: 274  FSRTG-WAATAEVSRPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRRYSHTE 450
            + +TG   AT +  RP    +   I PP + L     ++++        T +    SH+ 
Sbjct: 1622 YQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHST 1681

Query: 451  EANREHLSSTHKHALHRKNLHPP 519
               R H+     H    +   PP
Sbjct: 1682 WDPRRHMYEELNHCAPNRRCPPP 1704


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,559
Number of Sequences: 438
Number of extensions: 4866
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)