Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E14
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   5.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   5.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   7.1  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.4  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
 Frame = -2

Query: 470 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 291
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 290 GSKQCDFTSRVSHSKREARRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 114
                DF + +S S+    ++S  G  R            R R +G NS  C    +  V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379

Query: 113 DDFRSWRGVVLGR 75
            + R  RG   GR
Sbjct: 380 SNARKPRGRGRGR 392


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 25/115 (21%), Positives = 47/115 (40%)
 Frame = -2

Query: 404 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKREARRRS 225
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+       +      R   
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 224 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAALCC 60
                R+   + F+     + R G   ++C  S   V D  S+  + LG  +  C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  QHNAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRD 174
           QHN +L    P  +   S+ + E +   E + + RSRD
Sbjct: 33  QHNGSLAHEGPTNQTDYSSRHHESQFSQEAHAEQRSRD 70


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
 Frame = +1

Query: 28  SPGAGLSLNRSQHNAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVK------- 186
           S  AG SL  S  N+  PS+        S      R  + + P + +R +R +       
Sbjct: 210 SKSAGFSLFESASNSFTPSSFIESANMESLSIPSRRRPSSIAP-IGTRPSRKEIAFSNSS 268

Query: 187 KKTDSIDLRDPNGLRRRASRFECETRLVKSHCLEPPDSRGSTVSISLP 330
             TD   LR PN      +          S   + P S GS+VS SLP
Sbjct: 269 TPTDQT-LRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLP 315


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 476 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 327
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,121
Number of Sequences: 5004
Number of extensions: 66690
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)