Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E10
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    92   1e-19
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    92   1e-19
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    28   1.8  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -1

Query: 294 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 115
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 114 D 112
           D
Sbjct: 386 D 386



 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
 Frame = -2

Query: 776 ATKEGHIMESNLXVYHXGQS-EWAREHLENLSLSILCLPKMK*LTALVSPRAKDTK-VSL 603
           A K+ H+ME  +         EWAREH E          + + +  +   R K  +  + 
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 602 LVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNP 423
             GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  + 
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDD 290

Query: 422 QK 417
            K
Sbjct: 291 AK 292



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -3

Query: 394 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 281
           NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -1

Query: 294 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 115
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 114 D 112
           D
Sbjct: 386 D 386



 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
 Frame = -2

Query: 776 ATKEGHIMESNLXVYHXGQS-EWAREHLENLSLSILCLPKMK*LTALVSPRAKDTK-VSL 603
           A K+ H+ME  +         EWAREH E          + + +  +   R K  +  + 
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTA 231

Query: 602 LVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNP 423
             GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  + 
Sbjct: 232 RWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDD 290

Query: 422 QK 417
            K
Sbjct: 291 AK 292



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -3

Query: 394 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 281
           NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 498 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 352
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 133 HGYTQEGSYSRRSCGYHNPS 74
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 381 SVDALFLITLPSFLWIPW 434
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,857
Number of Sequences: 5004
Number of extensions: 66171
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)