Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E08
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.58 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.2  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 338 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +2

Query: 671  APPXXXXXPXPXPPXXXXXXXXXXPPXPXSPXRGXPXP 784
            A P     P P PP          PP P  P    P P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 353 VQXCRRAPPPPLRSLISNLSNTCDLTPLPEW 261
           VQ      P P+ S    ++N  +L PLPEW
Sbjct: 2   VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/66 (24%), Positives = 17/66 (25%)
 Frame = +1

Query: 598 PXXLSPXXLHXRPPXXXXPXXPXLXPXTXPXXPXXXXPXXXLXXXPXXSPKXXLAPPXXS 777
           P   +P  L    P    P  P   P   P  P            P   P     PP   
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 778 XPPXXP 795
            PP  P
Sbjct: 475 APPPAP 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,519
Number of Sequences: 5004
Number of extensions: 15638
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)