Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E04
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    28   1.8  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   5.5  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   7.3  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 389 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 210
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 209 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
 Frame = -1

Query: 777 ATKEGSHYGIQLNXGTXEXQSEMGPENXWRNLSLSILCLPKMK*LTALVSPRAKDTK-VS 601
           A K+     IQ+N G+   + E   E+  + + +      + + +  +   R K  +  +
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTT 230

Query: 600 LLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRN 421
              GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +
Sbjct: 231 ARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGD 289

Query: 420 PQK 412
             K
Sbjct: 290 DAK 292



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 31/86 (36%), Positives = 43/86 (50%)
 Frame = -3

Query: 811 VIAHXQMKLXNSDKRRLTLWNPT*XGYHXGXK*NGXREHXEKPIPVDSVSAQDEMIDCIX 632
           V+AH Q++     +++  L      G     K    REH EK + + S   Q+EMID I 
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIG 219

Query: 631 XXXXXXXXXXTSRWHTKKLPRKTHQG 554
                     T+RW TK+LPRKTH+G
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 389 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 210
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 209 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
 Frame = -1

Query: 777 ATKEGSHYGIQLNXGTXEXQSEMGPENXWRNLSLSILCLPKMK*LTALVSPRAKDTK-VS 601
           A K+     IQ+N G+   + E   E+  + + +      + + +  +   R K  +  +
Sbjct: 172 AQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTT 230

Query: 600 LLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRN 421
              GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +
Sbjct: 231 ARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGD 289

Query: 420 PQK 412
             K
Sbjct: 290 DAK 292



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 31/86 (36%), Positives = 43/86 (50%)
 Frame = -3

Query: 811 VIAHXQMKLXNSDKRRLTLWNPT*XGYHXGXK*NGXREHXEKPIPVDSVSAQDEMIDCIX 632
           V+AH Q++     +++  L      G     K    REH EK + + S   Q+EMID I 
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIG 219

Query: 631 XXXXXXXXXXTSRWHTKKLPRKTHQG 554
                     T+RW TK+LPRKTH+G
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 493 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 347
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 587 VPTRSDTFVSFALGDTNAVNHFILGRHRIDRDRFL 691
           VPT +  F+   +     ++H ILGR+ I  D F+
Sbjct: 381 VPTNNSLFLLKNIPSFGGLHHCILGRYSISLDDFV 415


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 129 HGYTQEGS*SRRSCGYHNPS 70
           HGY+      R+ C YHNPS
Sbjct: 307 HGYSMYAL-ERKMCNYHNPS 325


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 376 SVDALFLITLPSFLWIPW 429
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,268
Number of Sequences: 5004
Number of extensions: 68212
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)