Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E04
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   141   7e-34
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   134   1e-31
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   3.3  
07_01_0761 + 5849466-5850677                                           28   7.7  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  141 bits (341), Expect = 7e-34
 Identities = 63/91 (69%), Positives = 73/91 (80%)
 Frame = -2

Query: 386 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 207
           A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR+SL   T R ALE+
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357

Query: 206 INLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 358 IKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388



 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -1

Query: 573 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 430
           P +  + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -3

Query: 811 VIAHXQM-KLXNSDKRRLTLWNPT*XGYHXGXK*NGXREHXEKPIPVDSVSAQDEMIDCI 635
           VI H Q+ K+    +++  L      G     K +   +  EK IPVD+V  +DEMID I
Sbjct: 162 VIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDII 221

Query: 634 XXXXXXXXXXXTSRWHTKKLPRKTHQG 554
                       +RW   +LPRKTH+G
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRG 248


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  134 bits (323), Expect = 1e-31
 Identities = 59/83 (71%), Positives = 69/83 (83%)
 Frame = -2

Query: 386 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 207
           A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR+SL   T R ALE+
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357

Query: 206 INLKFIDTSSKFGHGRFQTPADK 138
           I LKFIDTSSKFGHGRFQT  +K
Sbjct: 358 IKLKFIDTSSKFGHGRFQTTDEK 380



 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -1

Query: 573 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 430
           P +  + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -3

Query: 811 VIAHXQM-KLXNSDKRRLTLWNPT*XGYHXGXK*NGXREHXEKPIPVDSVSAQDEMIDCI 635
           VIAH Q+ K+    +++  L      G     K +   +  EK IPVD+V  +DEMID I
Sbjct: 162 VIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDII 221

Query: 634 XXXXXXXXXXXTSRWHTKKLPRKTHQG 554
                       +RW   +LPRKTH+G
Sbjct: 222 GVTKGKGYEGVVTRWGVTRLPRKTHRG 248


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 371  DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
            D +  + +P+GG P YG ++ D  +   C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402


>07_01_0761 + 5849466-5850677
          Length = 403

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -1

Query: 606 VSLLVGTQRSYPVRHTKXLRKVACI--GAWHPSRVSFTVARAGQKGYHHR 463
           V+LLVG  R   V        V+ +  G  HP   SFT+ RA      H+
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEHK 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,961,329
Number of Sequences: 37544
Number of extensions: 461213
Number of successful extensions: 1029
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)