Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E02
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   2.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   3.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   8.4  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +2

Query: 11  CFXXSAXVXRXAWAPSYGLLXVAAAPCSSRTCGLFFFF 124
           CF         +W   Y L+  AA  C     GLF +F
Sbjct: 712 CFNYLIRRGYYSWWKKYNLITAAAMDCGVAIAGLFIYF 749


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
 Frame = -3

Query: 583 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 404
           S+T+   R     H    L  ++    L S G    +S   +++   GK+   V P  + 
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326

Query: 403 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSEXSV 227
                DF + +S S+    ++S  G  R            R R +G NS  C    +  V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379

Query: 226 DDFRXWRGVVLGR 188
            + R  RG   GR
Sbjct: 380 SNARKPRGRGRGR 392


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 32  VXRXAWAPSYGLLXVAAAPCSSRTCG 109
           + R  W PSYG L V  +  ++ T G
Sbjct: 379 ITRRVWIPSYGYLSVDTSDANNPTIG 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,185
Number of Sequences: 5004
Number of extensions: 57106
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)