Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_E02
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    30   2.6  
AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine re...    30   2.6  
AF068709-17|AAC19257.2|  287|Caenorhabditis elegans Serpentine r...    29   3.4  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   7.9  

>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 50  APSYGLLXVAAAPCSSRTCGLFFFFFPRSASPGAGLXLNSLAARRCSXEHNTPPGTEVVY 229
           AP+ G L  A+   ++ T GLF      +++P  GL  NS A+   +    T P      
Sbjct: 291 APATGGLFGASTAPAAATGGLFSIGAASASTPSVGLFGNSSASTTAAAAPATAPAAASTG 350

Query: 230 RLFRAPTS 253
            LF A T+
Sbjct: 351 GLFGATTA 358


>AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine
           receptor, class x protein26 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 56  SYGLLXVAAAPCSSRTCGL-FFFFFPRSASPGAGLXLNS 169
           S+G++    A C+   CGL  FF FP   +P + L  NS
Sbjct: 38  SFGIITKNLAVCNIGMCGLCLFFLFPMQLAPSSFLVDNS 76


>AF068709-17|AAC19257.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein24 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 56  SYGLLXVAAAPCSSRTCGL-FFFFFPRSASPGAGLXLNS 169
           S+G++    A C+   CGL  FF FP   +P + L  NS
Sbjct: 38  SFGIITKNLAVCNIVMCGLGLFFLFPMQLAPSSVLVDNS 76


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
 Frame = +3

Query: 138  HHLAQGXVSTVSQHXAALPSTTPRQXRK---SSTDXSEPRHRTELYPDLRSRDARVKKKT 308
            HH      S+V+   A LPSTTP    +   SS   S     T       S  + VK+K+
Sbjct: 1386 HHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKS 1445

Query: 309  DSIDLRD--PNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFR 482
             SI +     +   R  S      R   S     PD   +  + S P+++     L + R
Sbjct: 1446 QSIAVSPLARDTRMRSPSPSHLHHRPASSSYTTRPDGVVTPATSSSPNNSGFVQDLISSR 1505

Query: 483  HNP 491
             +P
Sbjct: 1506 QSP 1508


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
 Frame = +3

Query: 138  HHLAQGXVSTVSQHXAALPSTTPRQXRK---SSTDXSEPRHRTELYPDLRSRDARVKKKT 308
            HH      S+V+   A LPSTTP    +   SS   S     T       S  + VK+K+
Sbjct: 1386 HHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKS 1445

Query: 309  DSIDLRD--PNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFR 482
             SI +     +   R  S      R   S     PD   +  + S P+++     L + R
Sbjct: 1446 QSIAVSPLARDTRMRSPSPSHLHHRPASSSYTTRPDGVVTPATSSSPNNSGFVQDLISSR 1505

Query: 483  HNP 491
             +P
Sbjct: 1506 QSP 1508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,182
Number of Sequences: 27780
Number of extensions: 341404
Number of successful extensions: 936
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)