Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_D24
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...   150   2e-37
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    28   1.4  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    28   1.9  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    27   3.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.3  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    27   4.3  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   7.6  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score =  150 bits (364), Expect = 2e-37
 Identities = 65/105 (61%), Positives = 85/105 (80%)
 Frame = -3

Query: 634 NSRTETLVEAEQTMKWLQAQEWGLVVLDEVHTIPAKMFRRVLTIVHSHAKLGLTATLLRE 455
           N+R  +  ++++ M +L  +EWG ++LDEVH +PA MFRRV+T + +H KLGLTATL+RE
Sbjct: 424 NTRNRSY-DSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTATLVRE 482

Query: 454 DDKIADLNFLIGPKLYEANWLELQAAGYIARVQCAEVWCPMTPEF 320
           DDKI DLNFLIGPK+YEANW++L   G+IA+VQCAEVWC MT EF
Sbjct: 483 DDKIDDLNFLIGPKMYEANWMDLAQKGHIAKVQCAEVWCAMTTEF 527



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 312 EYLVQKINKKMLLYVMNPSKFRGNQ 238
           EYL +   K+MLLY+MNP KF+  Q
Sbjct: 530 EYLRENSRKRMLLYIMNPKKFQACQ 554


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -3

Query: 565 LVVLDEVHTIPAKMFRRVLTIVHSHAK------LGLTATLLREDDK 446
           L++ DEVH + +  + R+L    + ++      +GLTATL R D K
Sbjct: 144 LLIFDEVHHMASPSYLRILEHFGAESEKSKVNVIGLTATLFRADGK 189


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +3

Query: 471 AVKPSLACECTMVSTLRNILAGIVCTSSSTTRPHSWAWSHFIVCSASTSVS 623
           ++   +AC   ++  L N+ + +V    +T    SW+W    +C+ ++SV+
Sbjct: 228 SISTYIACFAMLIFLLCNVGSHVVWDQPATVSGRSWSW--VFMCALNSSVA 276


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 306 LVQKINKKMLLYVMNPSKFRGNQHNKHPLFKKFRY 202
           +V  +++  +LY  N + +RG  +++H L+K  ++
Sbjct: 34  VVAPLDRVKILYQTNHASYRGYAYSRHGLYKAIKH 68


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 28/111 (25%), Positives = 47/111 (42%)
 Frame = +3

Query: 345 TSAHCTRAM*PAACSSSQFASYSFGPIRKFRSAILSSSRSRVAVKPSLACECTMVSTLRN 524
           TS+  + +  P+  SSS   S S        +A  SSS S   +  S +   +  ST   
Sbjct: 231 TSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTAS-SSSSSSSIISSSSSSSSSPTSTSST 289

Query: 525 ILAGIVCTSSSTTRPHSWAWSHFIVCSASTSVSVRELSWXTSLRGYPLPSA 677
           I +    +SS T+   + + S     S S+++S   +S  +S    P  S+
Sbjct: 290 ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 517 RVLTIVHSHAKLG-LTATLLREDDKIADLNFLIGPKLY-EANWLELQAAG 374
           R+L  V  H +   L   L +EDD+I D+ +L+G   Y EA  L+ Q  G
Sbjct: 214 RLLIEVEMHEEAHQLLVYLQKEDDQILDIWYLLGWNCYVEAQNLQEQGNG 263


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 625 TETLVEAEQTMKWLQAQEW-GLVVLDEVHTIPAKMFRRVLTIVHSHAKLGLTATL 464
           T   ++ E   K L+   W G+VV+DE +   +      LT+V+ +  L +  TL
Sbjct: 167 TAKALKLEDIKKILEHPTWNGIVVVDEAYIDFSAPDMSALTLVNEYPNLAVCQTL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,887
Number of Sequences: 5004
Number of extensions: 54799
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)