Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D24
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 139 2e-33
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985 31 0.86
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 30 2.0
04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222 29 3.5
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 3.5
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003 29 4.6
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 29 4.6
10_06_0088 - 10538037-10539463,10539696-10539789 29 6.0
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 28 8.0
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 28 8.0
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 28 8.0
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 139 bits (337), Expect = 2e-33
Identities = 63/106 (59%), Positives = 83/106 (78%), Gaps = 9/106 (8%)
Frame = -3
Query: 610 EAEQTMKWLQAQEWGLVVLDEV---------HTIPAKMFRRVLTIVHSHAKLGLTATLLR 458
++E+ ++ ++ +EWGL+++DEV H +PA MFR+V++I SH KLGLTATL+R
Sbjct: 389 DSEKIIEEIRNREWGLLLMDEVGYPLVIFEVHVVPAHMFRKVISITKSHCKLGLTATLVR 448
Query: 457 EDDKIADLNFLIGPKLYEANWLELQAAGYIARVQCAEVWCPMTPEF 320
ED++I DLNFLIGPKLYEANWL+L G+IA VQCAEVWCPMT EF
Sbjct: 449 EDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 494
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -1
Query: 312 EYLVQKINKK-MLLYVMNPSKFR 247
EYL ++ +KK +LY MNP+KFR
Sbjct: 497 EYLKKENSKKKQVLYAMNPNKFR 519
>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
Length = 773
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 357 CTRAM*PAACSSSQFASYSFGPIRKFRSAILSSSRSRVAVKPSLACE 497
C RA PAA ++ AS+ GP+ + + S+ VA+ +L C+
Sbjct: 3 CRRASIPAATEAAAVASWPLGPLALALALAILSAMPHVALSQNLTCK 49
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -3
Query: 574 EWGLVVLDEVHTI--PAKMFRRVLTIVHSHAKLGLTATLLRE--DDKIADLNFLIGPKLY 407
+W VVLDE HTI P R + SH + LT T L+ +D + L FL
Sbjct: 669 DWYRVVLDEAHTIKSPRTKAARAAYELTSHCRWCLTGTPLQNNLEDLFSLLCFLHVEPWG 728
Query: 406 EANW 395
+A+W
Sbjct: 729 DASW 732
>04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222
Length = 207
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 679 QADGSGYP-RNDVXHDNSRTETLVEAEQTMKWLQAQEWGLVVLDEVHTIPAKMFRRVLTI 503
+++ G P +N + E + ++T Q +EWG +V D+ T+P + V T+
Sbjct: 105 RSNARGMPAQNMTSSTQAIREPVAGTQKTTGIHQRREWGGIVRDQSETVPLRSV--VTTV 162
Query: 502 VHSHAK 485
+H+ K
Sbjct: 163 LHAEEK 168
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 29.5 bits (63), Expect = 3.5
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = -3
Query: 739 VQXCPRRTTA*XAGSHQKPRQADGSGYPRNDVXHDNSRTETLVEAEQTMKWLQAQEWGLV 560
++ CP GS K R+ G+ + + H T LV Q K + ++W +
Sbjct: 737 LKWCPAFKILTYFGS-AKERKQKRQGWMKPNYFHVCITTYRLVI--QDSKVFKRKKWKYL 793
Query: 559 VLDEVHTIPAKMFRRVLTIVHSHAK--LGLTATLLRED 452
+LDE H I +R T+++ ++K + LT T L+ D
Sbjct: 794 ILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQND 831
>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
Length = 603
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 229 TSSLQEVPI-LDPLGTLSVPSPLAFFKGIRNDDHRH 125
++ ++ VPI + P G PSP A K ++N+ H H
Sbjct: 12 SARMRAVPIAVTPEGFWCCPSPAALHKSLKNNPHHH 47
>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 312 PC*N-SGVMGH-HTSAHCTRA--M*PAACSSSQFASYSFGPIRKFRSAILSSSRSR 467
PC + SGV H H + CT P+ CSS S F +RK S S SRSR
Sbjct: 1467 PCNHASGVQQHGHNNLDCTSVPNFLPSGCSSGSVYSRRFDAMRKRTSDGGSFSRSR 1522
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 28.7 bits (61), Expect = 6.0
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Frame = +3
Query: 507 VSTLRNILAGIVCTSSSTT----RP--HSWAWSHFIVCS------ASTSVSVRELSWXTS 650
+S+L I+A + C T P HS AW+ + + AS S+ V ++W S
Sbjct: 339 LSSLAGIIASLACLGMGLTVIERSPPHHSPAWAVVLAIATVFTFVASFSIGVGPITWAYS 398
Query: 651 LRGYPLPSACLGF*CEPAXHAVVRRGXH*TVASLF 755
YPL G A + V+ G T SL+
Sbjct: 399 SEVYPLRLRAQGASVGVAINRVMNAGVSMTFVSLY 433
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 495 ECTMVSTLRNILAGIVCTSSSTTRPHSW-AWSHFIVCSASTSVSVRELSWXTSLRGYPLP 671
E T++++L+N+L I +SS HS+ + F CS S + R S + R P
Sbjct: 38 EKTLINSLKNLLIEIDISSSKNNLNHSYESGQTFTQCSGEASDTARVTSGGEARRQLAAP 97
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -3
Query: 571 WGLVVLDEVHTI---PAKMFRRVLTIVHSHAKLGLTATLLREDDKIADL 434
W LVV+DE H + +K++ L I + + GLT T+++ +KI +L
Sbjct: 260 WDLVVVDEAHRLKNEKSKLYTACLEIT-TRKRFGLTGTIMQ--NKIMEL 305
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 254 FDGFITYNNIFLFIFCTRY 310
F G++ Y N FL ++CT+Y
Sbjct: 515 FLGYVVYRNQFLNVYCTKY 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,318,423
Number of Sequences: 37544
Number of extensions: 410885
Number of successful extensions: 1150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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