Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D21
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 79 1e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 76 7e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 73 6e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 69 6e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 69 1e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 67 3e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 61 2e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 60 3e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 58 1e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 57 3e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 57 3e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 56 4e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 1e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 54 2e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 52 7e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 1e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 51 2e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 51 2e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 46 8e-06
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 43 4e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 43 6e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 2e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.020
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 34 0.020
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.082
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.082
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 32 0.11
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.77
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 29 1.0
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.3
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 28 1.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 1.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 26 7.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.4
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 78.6 bits (185), Expect = 1e-15
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = -2
Query: 608 VMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTL 429
V+ G+L + A E+HG+L+Q QR+ +L+ FR+ + + L+ATDVA+RG+DI G+ VIN+
Sbjct: 522 VIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEA 581
Query: 428 PATLEHYIH 402
PAT E Y+H
Sbjct: 582 PATHEVYLH 590
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = -1
Query: 246 EKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTP 67
+++ +LEP + +LDEE E+++ E+ K E ++K G + + R WFQ+
Sbjct: 645 KEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY-----GDEIRSRPARTWFQSE 699
Query: 66 KQKREEKERLALTTHVGKKKKK 1
K K+ K A K+KK
Sbjct: 700 KDKQASKASEAKDKKSLAKRKK 721
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 795 PVKLXVNSNKEVAFNLXQEFVRIRKERE 712
PV++ V++ K A L QEFVR+R +RE
Sbjct: 461 PVRVFVDNKKTTAKLLTQEFVRVRPQRE 488
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 400 GWVAQPGRVAPGVSVSLAGEGERNLVKSIVKRAS 299
G A+ GR G +++LAGEG+R ++K + K +S
Sbjct: 593 GRTARAGR--SGRAITLAGEGDRKVLKGVFKNSS 624
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 75.8 bits (178), Expect = 7e-15
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = -2
Query: 605 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 426
+L +L ++ ELH + Q +R++SL RFR + A +LVATDVA+RGLDIP V VINF LP
Sbjct: 277 ILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLP 336
Query: 425 ATLEHYIH 402
+ YIH
Sbjct: 337 RDPDDYIH 344
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 72.5 bits (170), Expect = 6e-14
Identities = 35/69 (50%), Positives = 45/69 (65%)
Frame = -2
Query: 608 VMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTL 429
++L LG A LHG L+Q RL +L +F+ LVATDVAARGLDIP V+ VIN+ +
Sbjct: 303 ILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDI 362
Query: 428 PATLEHYIH 402
P + YIH
Sbjct: 363 PTDSKAYIH 371
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 69.3 bits (162), Expect = 6e-13
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = -2
Query: 572 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+HG ++Q RL +L F+ + VLVATDVAARGLDIP V VIN T P T+E Y+H
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 68.5 bits (160), Expect = 1e-12
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 602 LGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 423
L +G A LHG+ +Q QR ++++ R + AD+LVATD+A RG+DIP V+ V+N+ +
Sbjct: 536 LNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAK 595
Query: 422 TLEHYIH 402
++E Y H
Sbjct: 596 SIEDYTH 602
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = -2
Query: 602 LGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPA 423
L L V + LH L+Q +RL SL++F+ VLV TDVAARG+DIP V VI++ +P
Sbjct: 409 LNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPH 468
Query: 422 TLEHYIH 402
T + Y+H
Sbjct: 469 TADMYVH 475
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = -2
Query: 581 AAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
A +HG Q +R +L+ FR + ++VAT VA+RGLDIP V VIN+ LP ++ Y+H
Sbjct: 457 ATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = -2
Query: 572 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+HG L Q +R ++L +FR+ + VL+ATD+ ARG+D GV VINF P ++ YIH
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = -2
Query: 578 AELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+ +HG ++Q QR + FR + +L+ TD+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 286 SSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 57.2 bits (132), Expect = 3e-09
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -2
Query: 572 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+HG + Q +R ++ FR+ + VL+ TD+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 57.2 bits (132), Expect = 3e-09
Identities = 25/68 (36%), Positives = 44/68 (64%)
Frame = -2
Query: 605 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 426
+L G ++++G+L+Q RL+ + FR + ++LV TDVA+RG+DIP + VIN+ P
Sbjct: 365 LLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFP 424
Query: 425 ATLEHYIH 402
+ ++H
Sbjct: 425 PQPKVFVH 432
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 56.4 bits (130), Expect = 4e-09
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = -2
Query: 698 AMLAALVCRTFRDPDRRLRADQAPGRTAXHV--MLGMLGVKAAELHGALNQPQRLDSLKR 525
A L + +D D ++ R A + L G A +HG Q +R L
Sbjct: 355 ARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNE 414
Query: 524 FREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
FR ++ ++VATDVA+RG+D+ G+ V N+ P E Y+H
Sbjct: 415 FRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = -2
Query: 572 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+HG L Q +R+ K F++ + VATDV RG+DI VN VIN+ +P + + Y+H
Sbjct: 325 IHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLH 381
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -2
Query: 572 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
LH L QR + FR+ Q+ +L ATDV ARG+D P + V+ T P+ + YIH
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.4 bits (120), Expect = 7e-08
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = -2
Query: 572 LHGALNQPQRLDSLKRFREQQ---ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
LHG+L+Q R +L F + + +L+ TDVAARGLD+P V+ V+ + P + + Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.0 bits (119), Expect = 1e-07
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = -2
Query: 590 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 411
G + +HG +Q R ++ ++ DVL+AT V ARGLD+ + V+N+ P +E
Sbjct: 692 GYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMED 751
Query: 410 YIH 402
Y+H
Sbjct: 752 YVH 754
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = -2
Query: 605 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 426
+L + + +LHG Q +R ++ F + +L+ T+VAARGLDIP V+ ++ + P
Sbjct: 355 LLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPP 414
Query: 425 ATLEHYIH 402
YIH
Sbjct: 415 DDPRDYIH 422
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = -2
Query: 590 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 411
G+ LHG Q R + +F + VL TD+ ARGLD P V+ VI P ++
Sbjct: 309 GISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDT 368
Query: 410 YIH 402
YIH
Sbjct: 369 YIH 371
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 235 QTRTGDCRNSRRGIRREADEQDGEANRQI 149
+ RTG R +R R+E +E+ E N QI
Sbjct: 3 KNRTGRSREAREKKRKEEEEEIEELNSQI 31
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 45.6 bits (103), Expect = 8e-06
Identities = 24/64 (37%), Positives = 29/64 (45%)
Frame = -2
Query: 593 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLE 414
LG H + Q R FR LV +D+ RG+DI VN VINF P E
Sbjct: 304 LGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAE 363
Query: 413 HYIH 402
Y+H
Sbjct: 364 TYLH 367
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -2
Query: 539 DSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 405
D+L +F+ + +VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 414 DTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 42.7 bits (96), Expect = 6e-05
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = -2
Query: 563 ALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
+L++ +R + RF ++LV +D+ ARG+D+ VIN+ P ++ Y+H
Sbjct: 470 SLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = -2
Query: 590 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 426
G A L G L QR + FR + VLV T+V ARG+D+ VN V+N+ +P
Sbjct: 376 GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 430
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -2
Query: 572 LHGALNQPQRLDSLKRFREQ-QADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
LHG Q R + ++F++ + VL TD+A+RGLDIP V+ V+ P + + H
Sbjct: 288 LHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 593 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 441
LG+ A L G N +R ++ FR+++ VLV V G DIP ++ ++
Sbjct: 288 LGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -2
Query: 593 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPAT 420
+G A ++Q + +++K+F++ + + L+AT + GLDI V+ +I + A+
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASAS 522
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.3 bits (70), Expect = 0.082
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 479 ARGLDIPGVNTVINFTLPATLEHYIH 402
ARGLD V V+NF +P+ + YIH
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIH 412
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.3 bits (70), Expect = 0.082
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 590 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 411
G+KA H L + +R ++ ++VAT G+D V VI+ + P +LE
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 410 Y 408
Y
Sbjct: 827 Y 827
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 560 LNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 441
+NQ Q+ +++ +FR + LVAT + GLDI + +I
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMII 554
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -1
Query: 201 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEK 46
E+ +EK + K+E + K + L ++E + + +R+ W Q+PK + K
Sbjct: 999 EDLSEKDLKKIEAKATKKKK-LTRNEIKAKERRARERELAWLQSPKGTEKPK 1049
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 243 KLIKLEPEIVAILDEEYAEKQMNKMEKQTA 154
K+I EPE+ AI D E ++KQ+ + E + A
Sbjct: 116 KMINEEPELKAIEDTEESKKQLQREESKEA 145
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 201 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRD 82
E ++ K E+ AK + L +DE +P P H RD
Sbjct: 404 ERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 443
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 282 DKYRPISSPNNREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKD--EAQPGP 109
+K R I+ NR++ ++ E E+ +EE +Q + ++ A ++ A+
Sbjct: 35 EKAREITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQTSERPPLSAEEAK 94
Query: 108 QHEPQRQRDWFQTPKQKREEKER 40
+ +++D ++ K +R+ K R
Sbjct: 95 RIREVKEKDRLESKKNERQGKPR 117
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 189 EKQMNKMEKQTAKLEVVL-KKDEAQPGPQHEPQRQRDWFQTPKQKREEKER 40
E ++N +E + V +KDE + + E +R+++ + K+K+E+KE+
Sbjct: 416 EAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK 466
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 566 GALNQPQRLDSLKRFREQQAD--VLVATDVAARGLDIPGVNTVINFTLPATLEHYI 405
G ++ +R + FR +++AT G++ GV V+++ LPA+ Y+
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 566 GALNQPQRLDSLKRFREQQAD--VLVATDVAARGLDIPGVNTVINFTLPATLEHYI 405
G ++ +R + FR +++AT G++ GV V+++ LPA+ Y+
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = -1
Query: 273 RPISSPNNREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQ 94
R + +EK + ++ +EE ++ ++ +Q A+ + K+ E + E +
Sbjct: 586 RELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQR 645
Query: 93 RQRD----WFQTPKQKREEKER 40
+R+ + +QKREEK++
Sbjct: 646 LKREQEKKQQELERQKREEKQK 667
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -1
Query: 264 SSPNNREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQR 85
S+ NN L+ E + A+ D++ EK+ + ++ ++ D + Q P+ +
Sbjct: 4023 SAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE- 4081
Query: 84 DWFQTPKQ-KREEKE 43
D P+ K +EKE
Sbjct: 4082 DHLDLPEDLKLDEKE 4096
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 177 NKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLA--LTTHVGKKKK 4
+K++ + E LKK+E + + E + Q Q K+K +EKER+ + KK+
Sbjct: 269 SKLDLEIESGEYFLKKEEKERKKRAEKKEQ----QKEKKKEKEKERMKAFIPPEESSKKR 324
Query: 3 K 1
K
Sbjct: 325 K 325
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 192 AEKQMNKMEKQTAKLEVVLK-KDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVG 16
AE++ + ++ AK E K K EA+ + E + + KRE +E++ T
Sbjct: 637 AEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEEN 696
Query: 15 KKKK 4
K+K
Sbjct: 697 AKRK 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,584
Number of Sequences: 5004
Number of extensions: 40774
Number of successful extensions: 171
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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