Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_D18
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   231   1e-61
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   231   1e-61
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.83 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.4  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    27   4.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  231 bits (564), Expect = 1e-61
 Identities = 117/209 (55%), Positives = 141/209 (67%)
 Frame = -1

Query: 740 GTIEDKVKWAXEHXENLSLSILCLPXDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTK 561
           G++ DKV+WA EH E           +EMID IGVT+G+  +        K      H +
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH-R 244

Query: 560 GXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 381
           G RKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST+
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTD 297

Query: 380 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 201
           +D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK
Sbjct: 298 FDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLK 357

Query: 200 FIDTSSKFGHGRFQTPADKAAFMGTLKKD 114
           +IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 358 WIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -2

Query: 778 QKXAHIYGIQLNGVPSRTK*NGPXNXWRTYPCRFCVCPKMK*LTALVSPKGKGYKGVTSR 599
           QK AH+  IQ+NG     K       +           + + +  +   +GKG +G T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 598 WHTKKLP 578
           W TK+LP
Sbjct: 233 WGTKRLP 239


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  231 bits (564), Expect = 1e-61
 Identities = 117/209 (55%), Positives = 141/209 (67%)
 Frame = -1

Query: 740 GTIEDKVKWAXEHXENLSLSILCLPXDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTK 561
           G++ DKV+WA EH E           +EMID IGVT+G+  +        K      H +
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH-R 244

Query: 560 GXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 381
           G RKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    D K    NAST+
Sbjct: 245 GLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTD 297

Query: 380 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 201
           +D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK
Sbjct: 298 FDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLK 357

Query: 200 FIDTSSKFGHGRFQTPADKAAFMGTLKKD 114
           +IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 358 WIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -2

Query: 778 QKXAHIYGIQLNGVPSRTK*NGPXNXWRTYPCRFCVCPKMK*LTALVSPKGKGYKGVTSR 599
           QK AH+  IQ+NG     K       +           + + +  +   +GKG +G T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 598 WHTKKLP 578
           W TK+LP
Sbjct: 233 WGTKRLP 239


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 405 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 503
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 372 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 494
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 135 HGYTQEGSYSRRSCGYHNPS 76
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 734 IEDKVKWAXEHXENLSLSILCLP 666
           IE  + WA E+ +    S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 357 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 485
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,827
Number of Sequences: 5004
Number of extensions: 70658
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)