Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D16
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.36
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.9
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 7.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +3
Query: 636 SPPXXTXAXPP---PPTPPXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRPVPPVXPXX 806
+PP + PP P PP P +P PS +P P P+PP P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS--APIAPPLPAGMPAAPPLPPAAPAP 476
Query: 807 PRXP 818
P P
Sbjct: 477 PPAP 480
Score = 29.9 bits (64), Expect = 0.48
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Frame = +3
Query: 636 SPPXXTXAXPPPPTPPXXPXXXRXS-PXXXPSXXS-PPXXPXXRXXXLPRP-VPPVXPXX 806
+PP T PP PP P S P P+ PP P P PP+ P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473
Query: 807 PRXP 818
P P
Sbjct: 474 PAPP 477
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Frame = +3
Query: 663 PPPPTP----PXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRPVPPVXP 800
PPP P P P S P +PP P LP PP P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +3
Query: 636 SPPXXTXAXPP-PPTPPXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRPVPPV 794
+PP P PP PP P + PP P P P PV
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPV 488
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +3
Query: 639 PPXXTXAXPPPPTPPXXPXXXRXSPXXXPS--XXSPPXXPXXRXXXLPRPVPPV 794
PP A PPPP P P R P S +PP P +PP+
Sbjct: 354 PPQGRSAPPPPP-PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.16
Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Frame = +3
Query: 642 PXXTXAXPPPPTPPXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRP---VPPVXPXXPR 812
P + A PP P P P P+ PP P +P+P VPPV P
Sbjct: 1162 PKPSVAAPPVPAPSSG-----IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 813 XPXXXXXXXLP 845
P LP
Sbjct: 1217 PPVPTPSAGLP 1227
Score = 29.5 bits (63), Expect = 0.63
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Frame = +3
Query: 642 PXXTXAXPPPPTP----PXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRP---VPPVXP 800
P + PP P P P P P PS PP P +P P +PPV
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231
Query: 801 XXPRXP 818
+ P
Sbjct: 1232 PTAKAP 1237
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Frame = +3
Query: 642 PXXTXAXPPPPTPPXXPXXXRXS----PXXXPSXXSPPXXPXXRXXXLPRPVPPVXPXXP 809
P + A PP P P P + S P PS PP P P P P P P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVP 1201
Query: 810 R 812
+
Sbjct: 1202 K 1202
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Frame = +3
Query: 642 PXXTXAXPPPPTPPXXPXXXRXS----PXXXPSXXSPPXXPXXRXXXLPRP---VPPV 794
P + A PP P P P + S P PS P P +P P +PPV
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Frame = +3
Query: 642 PXXTXAXPPPPTP----PXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRP---VPPV 794
P + A PP P P P P P PS +PP +P+P PPV
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Frame = +3
Query: 642 PXXTXAXPPPPTPPXXPXXXRXS----PXXXPSXXSPPXXPXXRXXXLPRP--VPPV 794
P + A PP P P P + S P PS P P +P P PPV
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/65 (26%), Positives = 19/65 (29%)
Frame = +3
Query: 594 PXXXXPXXXLCXXRSPPXXTXAXPPPPTPPXXPXXXRXSPXXXPSXXSPPXXPXXRXXXL 773
P P + P PPP P P P P +PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP-VPTPSAGLP 1227
Query: 774 PRPVP 788
P PVP
Sbjct: 1228 PVPVP 1232
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.36
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 639 PPXXTXAXPPPPTPPXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRPVPPVXPXXPRXP 818
PP A P P P P SPP P LP VPP+ P P P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP-----SLPSAVPPMPPKVPPPP 205
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = +3
Query: 657 AXPPPPTPPXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRPVPPVXPXXP 809
A P P PP R P PP P +P PP+ P
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSP-ASAPPIPSKAPPIPSSLP 172
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Frame = -1
Query: 817 GXRGXXGXTGGTGRGRXXXRXXGXXG---GXXXDGXXXGDXRXXXGXXGGVGGGGXAXV 650
G G G GG G GR R G G G G G G GG GG +
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVII 75
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/49 (26%), Positives = 16/49 (32%)
Frame = +3
Query: 636 SPPXXTXAXPPPPTPPXXPXXXRXSPXXXPSXXSPPXXPXXRXXXLPRP 782
+PP + PPPP P P PP P +P P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 639 PPXXTXAXPPPPTPPXXPXXXRXSPXXXPSXXSPP 743
PP A PPPP PP S P+ + P
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -3
Query: 332 PPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
PPP +RS+ L D+TP+ +W ++S W
Sbjct: 101 PPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/80 (26%), Positives = 22/80 (27%), Gaps = 8/80 (10%)
Frame = +3
Query: 594 PXXXXPXXXLCXXRSPPXXTXAXPPPPTPPXXPXXXR--------XSPXXXPSXXSPPXX 749
P P S P PPPP PP S S PP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTY 227
Query: 750 PXXRXXXLPRPVPPVXPXXP 809
+ LP P PP P P
Sbjct: 228 TPKQADPLPAPPPPPPPTLP 247
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 329 PPPLRSLISNLSNTCDLTPLPEW 261
P P+ S ++N +L PLPEW
Sbjct: 10 PKPMDSSHIKVTNVKELKPLPEW 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,551,712
Number of Sequences: 5004
Number of extensions: 18830
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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