Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D15
(838 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 32 0.44
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.8
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 520 PXAXPAXXPPXXSTXDXPPPNXGXXXPPPC 609
P PA PP + PPP G PPPC
Sbjct: 98 PCFGPACAPPAPIIVNGPPPCFGPACPPPC 127
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 520 PXAXPAXXPPXXSTXDXPPPNXGXXXPPPC 609
P PA P + PPP G PPPC
Sbjct: 126 PCFGPACAPSAPIIVNGPPPCFGPACPPPC 155
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 520 PXAXPAXXPPXXSTXDXPPPNXGXXXPPPC 609
P PA P + PPP G PPPC
Sbjct: 70 PCFGPACVPLAPIIVNGPPPCFGPACPPPC 99
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 514 GAPXAXPAXX-PPXXSTXDXPPPNXGXXXPPP 606
G+P PA PP T PPP G PPP
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 514 GAPXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
G+P PP T PPP G PPP
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 520 PXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
P A PP + PPP G PPP
Sbjct: 248 PLAGSGSPPPPPAAGSPPPPRTGSPPPPP 276
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +1
Query: 514 GAPXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
G+P P PP PPP PPP
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 514 GAPXAXPAXX-PPXXSTXDXPPPNXGXXXPPP 606
G+P PA PP T PPP G PPP
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 514 GAPXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
G+P PP T PPP G PPP
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 520 PXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
P A PP + PPP G PPP
Sbjct: 269 PLAGSGSPPPPPAAGSPPPPRTGSPPPPP 297
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +1
Query: 514 GAPXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
G+P P PP PPP PPP
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 514 GAPXAXPAXX-PPXXSTXDXPPPNXGXXXPPP 606
G+P PA PP T PPP G PPP
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 514 GAPXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
G+P PP T PPP G PPP
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 520 PXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
P A PP + PPP G PPP
Sbjct: 254 PLAGSGSPPPPPAAGSPPPPRTGSPPPPP 282
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +1
Query: 514 GAPXAXPAXXPPXXSTXDXPPPNXGXXXPPP 606
G+P P PP PPP PPP
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,973,306
Number of Sequences: 27780
Number of extensions: 107049
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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