Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_D11
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     28   7.5  
10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303     28   7.5  
02_02_0527 - 11191601-11192872                                         28   7.5  
11_06_0658 - 25963719-25963931,25964016-25964468                       28   9.9  
03_06_0519 - 34481751-34482722                                         28   9.9  

>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 459 KQEH-HGEHGAGRQRVCRGRVSGKTSG 536
           ++EH  GEHGAGR+ +C  R+    +G
Sbjct: 757 RREHLEGEHGAGREVLCETRLGVACAG 783


>10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303
          Length = 543

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 372 GVEPAGRGGQRAARHPRRSGASSPTSL 292
           G  PAG  G+R +      G+SSPTSL
Sbjct: 486 GSAPAGHDGRRGSLQGGHHGSSSPTSL 512


>02_02_0527 - 11191601-11192872
          Length = 423

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 640 RIYSMFESGAWDVTDLSSAVQSQDPWRGGSSRG 542
           ++  +  +G WDV   S+ ++    WR   SRG
Sbjct: 215 KVEKILRAGVWDVAQTSAPIELPAHWRRSLSRG 247


>11_06_0658 - 25963719-25963931,25964016-25964468
          Length = 221

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 302 GDEAPERRGWRAARCPPRPAGSTPTSAI 385
           G     R+G +AA  PP+P   TPT A+
Sbjct: 175 GKGGKRRKGKKAAGPPPQPQPCTPTGAV 202


>03_06_0519 - 34481751-34482722
          Length = 323

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 302 GDEAPERRGWRAARCPPRPAGSTPTSA 382
           G     R+G R A  PP  + STPT+A
Sbjct: 17  GGPPGNRKGKRGAEAPPATSSSTPTTA 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,423,517
Number of Sequences: 37544
Number of extensions: 300327
Number of successful extensions: 1200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)