Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_D10
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   4.3  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   9.8  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = -1

Query: 334  KINYTHARNVAHGI---QIKVATPGDHRALSAYLRKENIGFHTYALQEDRE--LRVVIRG 170
            +++YT  +  AH      +++A   ++++L+AY    N+  H  + ++DR   L  ++ G
Sbjct: 844  ELSYTLFKKAAHVFTPEDLRLAVE-EYKSLNAYTTAVNLALHVASARDDRNQALSYLVDG 902

Query: 169  VPK 161
            +P+
Sbjct: 903  MPE 905


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 391 LILQEKTAWNRVSQALQANKINYTHARNVAHG 296
           LILQ+ +  N V++ +  N++  THAR +  G
Sbjct: 480 LILQQISEQNMVAEDISDNELAKTHARYLIGG 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,166
Number of Sequences: 5004
Number of extensions: 45520
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)