Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D09
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1113 - 24068441-24068923 31 1.4
09_04_0164 + 15265878-15268701,15268782-15269200 30 2.4
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 3.2
11_05_0086 + 18964493-18965737,18965896-18966360 29 4.2
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 29 5.5
01_06_1740 - 39575614-39576981 28 7.3
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 28 7.3
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 28 7.3
06_03_0416 + 20568087-20568702,20568767-20570313 28 9.6
>07_03_1113 - 24068441-24068923
Length = 160
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +2
Query: 200 RLGKCTRPCRSRGGRI*PARPSEAPSCAGSFQWAHSVR*TR*SWAWGVPXTRHGSTTLF- 376
R G R CR G R + P+ A AG Q W WG + HG +
Sbjct: 37 RGGGPQRRCRRMGPR---SEPAAAAPAAGKKQRL---------WRWGCGGSPHGEESEAP 84
Query: 377 ADVVHVGAIGDHDARLQREQL 439
A VH G I DA QR+ +
Sbjct: 85 AAAVHAGRISSEDAAAQRQNI 105
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 661 WFKNDSPVYEYDVESNELIDSSPTSI 584
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +2
Query: 74 YLTGTSILSIHDAFGSSSFFLSSTRV*RGRRMF*PSPSRKRFRLGKCTRPCRSRGGRI*P 253
+L G +L++H + +SSF S V R +F PSP P + P
Sbjct: 53 FLFGEDLLAMHHSAAASSFDRSQPEVQVFRDVFSPSPPLLHVAETSSLLPTAAAAAPAPP 112
Query: 254 ARPSEAPS 277
P+ APS
Sbjct: 113 PPPAPAPS 120
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 210 SVLVHVAPEEGGYDQLARAKHLHARVLFNGHILSVEPGDLGLGASLXRGTGAPPCL 377
S++ H P +GG D + + L++ H+LS + + G AP CL
Sbjct: 446 SLVFHPEPLDGGDDAMLHITYYKEEELYDKHLLSYNRHSVLAAPTSGGGAMAPACL 501
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 685 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 536
GSP P +H F+N++ E ++ SN +SS I ++ T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282
>01_06_1740 - 39575614-39576981
Length = 455
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 299 PIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFG 186
P+ + PR VLRS LV+S + + D Y Q + G
Sbjct: 369 PLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKG 406
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 468 IALLSSRNA---LSCSR*SLASWSPIAPTWTTSANRVVLPCRVQGTPQAQ 328
+A+LSSR A LS S S A P P W++SA + +LP P Q
Sbjct: 186 VAVLSSRTAVSPLSSSSSSPAHRHPRRPHWSSSAAQGLLPLLRASPPHLQ 235
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 478 YNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGKQGGA 362
Y + EL R KLFP +++V +D + QGGA
Sbjct: 900 YQSYMGRELHFREKLFPRLKQLIVDNMPNLDELSFQGGA 938
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -1
Query: 332 PKITWFNGQNVPIEKNPRMKVLRSGELVI----SSLLWS 228
P+I WF ++ P+ +N ++ G+LV+ +L+WS
Sbjct: 90 PEIVWFANRDHPVGENATVQFTELGDLVLYDADGTLVWS 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,373,639
Number of Sequences: 37544
Number of extensions: 383404
Number of successful extensions: 1207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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