Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D07
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 109 3e-25
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 30 0.31
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 29 0.73
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 26 5.1
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.1
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 26 6.8
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 25 9.0
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 9.0
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 25 9.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.0
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 25 9.0
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 109 bits (263), Expect = 3e-25
Identities = 66/191 (34%), Positives = 91/191 (47%)
Frame = -1
Query: 702 QRDAFTRVLKGQIMIGSALFPKGVKGNVLDSFARHALWEXXXXXXXXXXXXXXXXLNVHE 523
+R T LKG I + + +FPKG G ++D AR LW+ LNVHE
Sbjct: 422 ERQTATLALKGHIALANIVFPKGTTGYMIDVLARQYLWKYGLDYLHGTGHGVGSFLNVHE 481
Query: 522 GPSGVSWRPYPDDPGLNVGQILSNEPGFYKVGEYGIRHEDLIEIVAVDKGSDRPKAKNLR 343
P G+ R + L G + SNEPGFY+ G +G R E+ + I V N
Sbjct: 482 LPVGIGSREVFNSAPLQAGMVTSNEPGFYEDGHFGYRVENCVYITEV----------NTE 531
Query: 342 GDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKD 163
+ GR LG LTL P+ ++ ID +L+ E+ Y+N YH V TLSP+L +
Sbjct: 532 NRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLS----VSA 587
Query: 162 LEWLEGRCIPI 130
+WL PI
Sbjct: 588 KKWLSKHTSPI 598
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 30.3 bits (65), Expect = 0.31
Identities = 24/112 (21%), Positives = 52/112 (46%)
Frame = -1
Query: 471 VGQILSNEPGFYKVGEYGIRHEDLIEIVAVDKGSDRPKAKNLRGDYDGRGVLGFSTLTLV 292
+ QI N K+ + G+ ++E + +DKG D K ++G Y L + L +
Sbjct: 84 LAQINDNGSKALKLYQKGVT---ILERLLIDKGEDADLKKKIQGAYCSIAELFMTDLCMQ 140
Query: 291 PNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKDLEWLEGRCI 136
P+ E + E+ T + ++A + L TL+ + + +++ + +C+
Sbjct: 141 PDAEE--NCELYTKLALQ-IDATNAEALQTLASMRISQQKIEEAKDALSKCL 189
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 300 TLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKDLEWL 151
TL+ Q +D +L E ++ ++L L+P E+ LK LEWL
Sbjct: 68 TLLGEQSVQVDRVLLNRTENEKIDLECVQILRLLAPFFTEKNALKVLEWL 117
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = -2
Query: 659 SAALYSRKALRATFWTASRVTPCGRWAWTTVTGRVTAWVTTSTCTRVRPVSRGVRTPTIL 480
++ LY+ + + T+S T + T +TG T+ VT+ST P++ RT T
Sbjct: 595 TSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSI---PLTSTNRTSTTF 651
Query: 479 D*TLDRY*ATNLASTKSGNTEFATK 405
T +T+ +ST + +T FA++
Sbjct: 652 --TSSTSISTSSSSTATSSTSFASE 674
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 468 GQILSNEPGFYKVGEYGIRHEDLI 397
G + + EPG Y E GIR ED +
Sbjct: 408 GNVFTVEPGIYIPDEIGIRIEDAV 431
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = -1
Query: 501 RPYPDDPGLNVGQILSNEPGFYKVGE----YGIRHEDLIEIVAVDKGSDRPKAKNLRGDY 334
+P PD GL +LS PG K + D++E+ A D S R + L G
Sbjct: 400 KPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRSKRLLDEQLFGVT 459
Query: 333 DGRGVLGF 310
D + + G+
Sbjct: 460 DSQSLAGY 467
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 130 NQEVNPQEAWITRATEMQDLVSMRIG 53
N ++P++ W+TR E D V RIG
Sbjct: 203 NFNLSPRQIWVTRHGESVDNVRGRIG 228
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 432 VGEYGIRHEDLIEIVAVDKGSDRPKAKNL-RGDYDGRGVLGFSTLTLV 292
VG+ + +DL+EI + G P L GDY RG T+TL+
Sbjct: 49 VGDIHGQFDDLLEIFRI--GGPCPYTNYLFLGDYVDRGYYSIETITLL 94
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 415 NSVFPDFVEARFVAQYLSNVQSRIVGVRTPRDTGRTLVHVEVV 543
N FP AR AQ+++N S+ + V T D R L+ VV
Sbjct: 650 NMHFPQSTNARSEAQFIANTDSQYL-VPTSGDPLRGLIQDHVV 691
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 484 SWTERWTD---IEQRTWLLQSRGIRNSPRRSNRDCGC 383
S+ E+ T+ IE W+L + G+ N R+N GC
Sbjct: 60 SYAEKETEVQAIEVTKWILSNGGVWNGIDRANETPGC 96
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 505 VASVPRRSWTERWTDIEQRTW 443
V+ +R+WT W I R W
Sbjct: 204 VSQQQQRAWTRAWNAIRNRAW 224
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 136 DASTFEPLQILKQTALLQYRTQCVKHSSMVRV 231
+AS + I K LQY C HS +VRV
Sbjct: 55 EASVYSEYTIPKLYIKLQYCVSCAIHSRVVRV 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,288
Number of Sequences: 5004
Number of extensions: 58466
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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