Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_D05
         (891 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.        32   2.4  
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.     32   2.4  
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    31   4.2  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               31   4.2  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        31   4.2  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    31   4.2  

>BC034003-1|AAH34003.1|  600|Homo sapiens PRR12 protein protein.
          Length = 600

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 19/63 (30%), Positives = 20/63 (31%)
 Frame = +2

Query: 485 PXLCPXLXXXXPPXTPXLXSWSXVXXPAXAAXRXXPDQXSPPAKHXXPPXPSXLXPXGPX 664
           P L P      PP  P L S +    P        P    PPA    P  P    P  P 
Sbjct: 58  PPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPA 117

Query: 665 XPS 673
            PS
Sbjct: 118 LPS 120


>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
          Length = 1217

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 19/63 (30%), Positives = 20/63 (31%)
 Frame = +2

Query: 485 PXLCPXLXXXXPPXTPXLXSWSXVXXPAXAAXRXXPDQXSPPAKHXXPPXPSXLXPXGPX 664
           P L P      PP  P L S +    P        P    PPA    P  P    P  P 
Sbjct: 603 PPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPA 662

Query: 665 XPS 673
            PS
Sbjct: 663 LPS 665


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 29/123 (23%), Positives = 31/123 (25%)
 Frame = +3

Query: 522 PKPPXXXRGPXWXSXPXQPXXXAPIRXPXPQNTXXPPXXALXFPXDPXXXQXXXXDKXPX 701
           P+PP    GP     P  P    P     P N    P   + FP  P   Q       P 
Sbjct: 237 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP-FGQPPLGPLPP- 294

Query: 702 XXPSXPCPXASXXPXPEXXAXXXXSXYPAPHXKYXXXXXXXXFXXXPPPXXLLXPXXXPX 881
             P  P P     P P           P P                PPP     P   P 
Sbjct: 295 -GPPPPVPGYGPPPGPPPPQQGPPPP-PGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPP 352

Query: 882 XXP 890
             P
Sbjct: 353 PAP 355


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 29/123 (23%), Positives = 31/123 (25%)
 Frame = +3

Query: 522 PKPPXXXRGPXWXSXPXQPXXXAPIRXPXPQNTXXPPXXALXFPXDPXXXQXXXXDKXPX 701
           P+PP    GP     P  P    P     P N    P   + FP  P   Q       P 
Sbjct: 237 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP-FGQPPLGPLPP- 294

Query: 702 XXPSXPCPXASXXPXPEXXAXXXXSXYPAPHXKYXXXXXXXXFXXXPPPXXLLXPXXXPX 881
             P  P P     P P           P P                PPP     P   P 
Sbjct: 295 -GPPPPVPGYGPPPGPPPPQQGPPPP-PGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPP 352

Query: 882 XXP 890
             P
Sbjct: 353 PAP 355


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 29/123 (23%), Positives = 31/123 (25%)
 Frame = +3

Query: 522 PKPPXXXRGPXWXSXPXQPXXXAPIRXPXPQNTXXPPXXALXFPXDPXXXQXXXXDKXPX 701
           P+PP    GP     P  P    P     P N    P   + FP  P   Q       P 
Sbjct: 274 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP-FGQPPLGPLPP- 331

Query: 702 XXPSXPCPXASXXPXPEXXAXXXXSXYPAPHXKYXXXXXXXXFXXXPPPXXLLXPXXXPX 881
             P  P P     P P           P P                PPP     P   P 
Sbjct: 332 -GPPPPVPGYGPPPGPPPPQQGPPPP-PGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPP 389

Query: 882 XXP 890
             P
Sbjct: 390 PAP 392


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 29/123 (23%), Positives = 31/123 (25%)
 Frame = +3

Query: 522 PKPPXXXRGPXWXSXPXQPXXXAPIRXPXPQNTXXPPXXALXFPXDPXXXQXXXXDKXPX 701
           P+PP    GP     P  P    P     P N    P   + FP  P   Q       P 
Sbjct: 237 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP-FGQPPLGPLPP- 294

Query: 702 XXPSXPCPXASXXPXPEXXAXXXXSXYPAPHXKYXXXXXXXXFXXXPPPXXLLXPXXXPX 881
             P  P P     P P           P P                PPP     P   P 
Sbjct: 295 -GPPPPVPGYGPPPGPPPPQQGPPPP-PGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPP 352

Query: 882 XXP 890
             P
Sbjct: 353 PAP 355


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,413,236
Number of Sequences: 237096
Number of extensions: 1016275
Number of successful extensions: 2839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2749
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)