Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_D04
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         31   0.87 
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    31   1.2  
12_02_0307 - 17311673-17312032                                         29   6.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   6.2  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 717 PXPPXXXXPLAPXRKXXPXKRXXXPPXXXPPHXPSSGPXAXGR 845
           P P     P +P RK  P  +   P    PP  P S P   G+
Sbjct: 512 PPPSSGWLPKSPERKKAPPPQAEPPTEYSPPATPESSPPPEGK 554


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +3

Query: 690  PXPX*XQXXPXPPXXXXPLAPXRKXXPXKRXXXPPXXXPPHXPSSGPXAXG 842
            P P      P PP    P  P  +  P      PP   PP  PSS P + G
Sbjct: 1172 PPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSS-PSSLG 1221


>12_02_0307 - 17311673-17312032
          Length = 119

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 789 PPXXXPPHXPSSGPXAXGR 845
           PP   PPH P SGP A  R
Sbjct: 99  PPTQQPPHRPGSGPTALRR 117


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +3

Query: 717 PXPPXXXXPLAPXRKXXPXKRXXXPPXXXPPHXPSSGP 830
           P PP    P  P +   P      PP   PP  PS  P
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,324,322
Number of Sequences: 37544
Number of extensions: 132427
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)