Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_D02
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 135 3e-32
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 135 3e-32
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
06_03_0543 + 21967787-21970261 29 5.6
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.4
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 9.7
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 9.7
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 28 9.7
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 135 bits (327), Expect = 3e-32
Identities = 60/105 (57%), Positives = 75/105 (71%)
Frame = -1
Query: 673 HXQVXLLNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 494
H NQ+Q +F E RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 107 HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP 166
Query: 493 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 359
N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDP
Sbjct: 167 ANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = -2
Query: 771 PR*XFVXXSRPFGQRAVLXFAAHTGXTXIAGRFTXRXF 658
P+ V +RP+GQRAVL FA +TG IAGR T F
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 135 bits (327), Expect = 3e-32
Identities = 60/105 (57%), Positives = 76/105 (72%)
Frame = -1
Query: 673 HXQVXLLNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 494
H NQ+Q +F E RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 107 HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP 166
Query: 493 CNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 359
N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDP
Sbjct: 167 ANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = -2
Query: 771 PR*XFVXXSRPFGQRAVLXFAAHTGXTXIAGRFTXRXF 658
P+ V +RP+GQRAVL FA +TG IAGR T F
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTF 112
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 211 TRCSSCFWSTPCSRRMVCPGTR*VEHN 131
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 211 TRCSSCFWSTPCSRRMVCPGTR 146
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 463 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 374
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 211 TRCSSCFWSTPCSRRMVCPGTR*VEHN 131
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 477 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRXSRNAAWIWFS 656
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 657 K 659
K
Sbjct: 64 K 64
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 358 RGHGRRTNQPQHPSAGHGEAHHEASTLH 441
R HG + H GHG +HH +H
Sbjct: 68 RAHGDHHHGHHHHHHGHGHSHHHGPEVH 95
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -1
Query: 706 AHRXYAYCGTFHXQVXLLNQIQAAFREXRLLIVLDPAQDHQP--ITEASYVNIPVIALCN 533
+ + YA+ T+ Q ++N+I+ +E R LIV+D + E + + +
Sbjct: 245 SEQGYAWTETWCAQ-EIINKIRDEIKEKRYLIVIDDIWEKSAWECIECALIENDRGSRII 303
Query: 532 TDSPLRFVDIAIPCNTKSSHSI 467
T S R +D A PC+++ H++
Sbjct: 304 TTS--RVLDAATPCSSEVDHTV 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,508,540
Number of Sequences: 37544
Number of extensions: 381429
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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