Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_D01
         (1142 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    31   7.8  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               31   7.8  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    31   7.8  

>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 34/142 (23%), Positives = 36/142 (25%), Gaps = 1/142 (0%)
 Frame = +1

Query: 538 PXPFXSXXXKXXFXPXXXPP-PGKNPPGXXXFXQXPPGGXXLXGXXGHXPXXGEXPPLFX 714
           P P         F     PP P   PPG       PP G  L       P  G+ PP   
Sbjct: 218 PGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPP--P 275

Query: 715 KIFGXPQKXGXXPXHXLKXXPXXWFXXKKTPPSX*KKQNPPXXQHTXXXXXXXXXRXXPX 894
            +    Q  G  P   L   P         PP     Q  P                 P 
Sbjct: 276 PVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPL 335

Query: 895 XXXPXPPPTPXXPXXXGGXNPH 960
              P PP  P  P       PH
Sbjct: 336 TLAP-PPHLPGPPPGAPPPAPH 356


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 34/142 (23%), Positives = 36/142 (25%), Gaps = 1/142 (0%)
 Frame = +1

Query: 538 PXPFXSXXXKXXFXPXXXPP-PGKNPPGXXXFXQXPPGGXXLXGXXGHXPXXGEXPPLFX 714
           P P         F     PP P   PPG       PP G  L       P  G+ PP   
Sbjct: 218 PGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPP--P 275

Query: 715 KIFGXPQKXGXXPXHXLKXXPXXWFXXKKTPPSX*KKQNPPXXQHTXXXXXXXXXRXXPX 894
            +    Q  G  P   L   P         PP     Q  P                 P 
Sbjct: 276 PVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPL 335

Query: 895 XXXPXPPPTPXXPXXXGGXNPH 960
              P PP  P  P       PH
Sbjct: 336 TLAP-PPHLPGPPPGAPPPAPH 356


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 34/142 (23%), Positives = 36/142 (25%), Gaps = 1/142 (0%)
 Frame = +1

Query: 538 PXPFXSXXXKXXFXPXXXPP-PGKNPPGXXXFXQXPPGGXXLXGXXGHXPXXGEXPPLFX 714
           P P         F     PP P   PPG       PP G  L       P  G+ PP   
Sbjct: 218 PGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPP--P 275

Query: 715 KIFGXPQKXGXXPXHXLKXXPXXWFXXKKTPPSX*KKQNPPXXQHTXXXXXXXXXRXXPX 894
            +    Q  G  P   L   P         PP     Q  P                 P 
Sbjct: 276 PVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPL 335

Query: 895 XXXPXPPPTPXXPXXXGGXNPH 960
              P PP  P  P       PH
Sbjct: 336 TLAP-PPHLPGPPPGAPPPAPH 356


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,872,246
Number of Sequences: 237096
Number of extensions: 2658800
Number of successful extensions: 5814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5137
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 15976881214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)